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ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
https://ersilia.io
GNU General Public License v3.0
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🐛 Bug: Failed to fetch model "eos2lm8" due to "Model API eos2lm8:predict did not produce an output" #400

Closed ting96haha closed 1 year ago

ting96haha commented 1 year ago

Describe the bug.

The model cannot be fetched successfully due to empty output error. The error message while fetching the model is "Model API eos2lm8:predict did not produce an output"

Describe the steps to reproduce the behavior

The error occurs in the ersilia -v fetch eos2lm8 > eos2lm8_fetch.log 2>&1 command line.

Expected behavior.

Successfully fetch the model

Screenshots.

error_eos2lm8

Operating environment

Arch Linux

Additional context

Please refer to the log file for detailed information eos2lm8_fetch.log

ting96haha commented 1 year ago

Hi, @GemmaTuron, although the model cannot be fetched in local machine, I successfully fetched and predict on the Google Colab. Would you guide me through the reason behind this phenomena? Many thanks

GemmaTuron commented 1 year ago

If it works in Google Colab but not on your local system it points at a problem in your set up In this case, I see on line 18 the error: 23:33:26 | DEBUG | Cloning from github to /home/ting/eos/dest/eos2lm8 Skipping object checkout, Git LFS is not installed.

You need Git Large File Storage as explained in the prerequisites for ersilia, make sure it is recognized in your system (usually requires a reboot after installation)

ting96haha commented 1 year ago

If it works in Google Colab but not on your local system it points at a problem in your set up In this case, I see on line 18 the error: 23:33:26 | DEBUG | Cloning from github to /home/ting/eos/dest/eos2lm8 Skipping object checkout, Git LFS is not installed.

You need Git Large File Storage as explained in the prerequisites for ersilia, make sure it is recognized in your system (usually requires a reboot after installation)

Thank you very much. I had reinstall the Git Large File Storage again for ersilia. After that, I can fetch the model within 3 mins. Thank you for your help.