search

ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
https://ersilia.io
GNU General Public License v3.0
203 stars 131 forks source link

🐛 Bug: Laptop Hangs for a long time and stops fetching :Model eos9ei3 #416

Closed Dorothy2020 closed 1 year ago

Dorothy2020 commented 1 year ago

Describe the bug.

1.Laptop hangs for a long time and stops fetching

Describe the steps to reproduce the behavior

  1. Activated ersilia using commnad conda activate ersilia
  2. Fetched the model using command ersilia -v fetch eos9ei3

Expected behavior.

No response Screenshot from 2022-10-24 05-45-20

Screenshots.

No response

Operating environment

Ubuntu 20.04

Additional context

No response

EstherIdabor commented 1 year ago

Hi @Dorothy2020 any time you open an issue make it as descriptive as possible, so help can be provided adequately. For instance you didn't include the step you took before the error happened and what the expected behaviour is and for the error log, you are supposed to attach the file while describing the error and not the path to the file.

GemmaTuron commented 1 year ago

Hello @Dorothy2020,

Have you completed the checks before? ersilia --help

and running eos3b5e

Dorothy2020 commented 1 year ago

@GemmaTuron yes I did

Dorothy2020 commented 1 year ago

@GemmaTuron this is the error log file for model eos9ei3 eos9ei3.log

GemmaTuron commented 1 year ago

HEllo @Dorothy2020,

The log shows the run has been aborted, which means you stopped it before it could complete...

Dorothy2020 commented 1 year ago

Let me try it again

Dorothy2020 commented 1 year ago

@GemmaTuron the model has been fetched successfully Steps taken:

  1. Closed all the tabs that were causing the laptop to hang.
  2. Activated ersilia environment by using :conda activate ersilia
  3. Fetched the model using command :ersilia -v fetch eos9ei3
  4. Serve the model using command:ersilia serve eos9ei3
  5. During the fetching time I found this error : "ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. bentoml 0.11.0 requires sqlalchemy<1.4.0,>=1.3.0, but you have sqlalchemy 1.4.36 which is incompatible".

Operating environment Ubuntu 20.04.5 conda 22.9.0 Python 3.7.13

Screenshot from 2022-10-24 17-34-01

GemmaTuron commented 1 year ago

Hi @Dorothy2020

Good! If you check down in the log you will see how the system automaticlly updates sqlalchemy after finding the dependency issue.

Dorothy2020 commented 1 year ago

@GemmaTuron checking on it

GemmaTuron commented 1 year ago

I will close this issue due to inactivity. This is one of the models that appears to have long run times. Perhaps a candidate for distillation?