GemmaTuron
commented
9 months ago @miquelduranfrigola
Just for your info, I've solved this by simply passing the list directly
Closed GemmaTuron closed 9 months ago
GemmaTuron
commented
9 months ago @miquelduranfrigola
Just for your info, I've solved this by simply passing the list directly
Describe the bug.
The "approve dispatch" command to create new repos was failing when updating metadata - see https://github.com/ersilia-os/ersilia/actions/runs/6979079982/job/18992147729
The parsing of the JSON field changed (not sure when or in which script) but it now parses the tag as a list already
{'model_name': 'Antituberculosis activity prediction', 'model_description': "Prediction of the activity of small molecules against Mycobacterium tuberculosis. This model has been developed by Ersilia thanks to the data provided by the Seattle Children's (Dr. Tanya Parish research group). In vitro activity against M. tuberculosis was measured i na single point inhibition assay (10000 molecules) and selected compounds (259) were assayed in MIC50 and MIC90 assays. Cut-offs have been determined according to the researcher's guidance.", 'slug': 'antitb-seattle', 'tag': ['M.tuberculosis', 'Antimicrobial activity', 'MIC90', 'Tuberculosis'], 'publication': 'https://ersilia.io/', 'source_code': 'https://github.com/ersilia-os/lazy-qsar', 'license': 'GPL-3.0'} File "/home/runner/work/ersilia/ersilia/.github/scripts/update_metadata.py", line 115, in populate_metadata tags = [tag.strip() for tag in self.json_input["tag"].split(",")]Describe the steps to reproduce the behavior
No response
Expected behavior.
No response
Screenshots.
No response
Operating environment
Ubuntu 20.04 LTS
Additional context
No response