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ersilia-os / ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
https://ersilia.io
GNU General Public License v3.0
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🐛 Bug: "New model ready for testing" issue is triggered before upload to DockerHub is completed #959

Closed miquelduranfrigola closed 5 months ago

miquelduranfrigola commented 7 months ago

Describe the bug.

In model eos7d58, a "New model ready for testing" issue was opened before upload to DockerHub was completed... https://github.com/ersilia-os/eos7d58/issues/2 Here you can see the failed dockerhub workflow: https://github.com/ersilia-os/eos7d58/actions/runs/7828896799/job/21359729719

The issue should only be opened when all other workflows are completed.

Describe the steps to reproduce the behavior

Check the workflows in https://github.com/ersilia-os/eos7d58

Expected behavior.

We should modify the YAML files in the https://github.com/ersilia-os/eos-template repository to open the issue only after upload to DockerHub has been done.

Screenshots.

No response

Operating environment

Ubuntu 20.04 LTS

Additional context

No response

GemmaTuron commented 7 months ago

@miquelduranfrigola and @DhanshreeA This is as simple as removing the test issue part from the model_test and putting it at the end of the dockerhub upload. I agree this makes more sense. Should we also add Hellen's suggestion to decrease the Docker image clearing cache?

GemmaTuron commented 7 months ago

Hi @miquelduranfrigola and @DhanshreeA

Should I make the edit to the workflow files?

miquelduranfrigola commented 7 months ago

I think we can go ahead, yes

DhanshreeA commented 7 months ago

This is open and I can do this today. I think we should retroactively patch existing model repositories as well (in case we make a change in the future and need to re-test/upload new images?) But this will be low priority.

GemmaTuron commented 7 months ago

We have an automated script to update all workflows, but maybe let's do that once we are sure all issues with Ersilia's API keys changes are working - we could then to a model update at scale @DhanshreeA ?

miquelduranfrigola commented 7 months ago

Please note that there is this script in @DhanshreeA and @GemmaTuron . Is this useful? https://github.com/ersilia-os/ersilia/blob/master/.github/scripts/update_model_workflows_from_template.py

DhanshreeA commented 5 months ago

Addressed here: https://github.com/ersilia-os/eos-template/issues/48