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ersilia-os / pharmacogx-embeddings

Pharmacogenomics knowledge graph embeddings and related analyses
GNU General Public License v3.0
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Zscore by gene #21

Closed miquelduranfrigola closed 2 weeks ago

miquelduranfrigola commented 11 months ago

Currently, z-scores are calculated in scripts/merge_results.py using mean and standard deviation across all pairs. To have a normalized measure by gene, it would be good to add, in addition, a z-score normalized by gene. At the moment, I don't think it is necessary to do normalization by chemical.

miquelduranfrigola commented 3 months ago

We have not done this and I don't thing we will do it for now.