datasource for Cao et al. cerebrum processing

erwinerdem / STEAP

Single cell Type Enrichment Analysis for Phenotypes (STEAP)

GNU General Public License v3.0

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datasource for Cao et al. cerebrum processing #1

Closed JonnyBaseball closed 3 years ago

JonnyBaseball commented 3 years ago

Hello,

I hope you are well!

I am somewhat new to scNRA processing, but was working through your jupytr notebook examples for processing the raw scNRA to ES data for CELLECT. I'm particularly interested in the fetal brain tissue and was trying the cerebrum file. What file did you use for the input? I've checked the GEO database and there are several listed samples for "brain" tissue: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE156793.

Very respectfully, Dab

erwinerdem commented 3 years ago

Hi,

I acquired the Descartes datasets from the site: https://descartes.brotmanbaty.org/bbi/human-gene-expression-during-development/ Hope this helps!

JonnyBaseball commented 3 years ago

This is fantastic! Thank you!!

V/R Dan

On Tue, Jul 13, 2021 at 9:24 AM Erwin Erdem @.***> wrote:

Hi,

I acquired the Descartes datasets from the site:

https://descartes.brotmanbaty.org/bbi/human-gene-expression-during-development/ Hope this helps!

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