To my understanding, the summary report created by CDAP that correspond to the log2 TMT ratios are median-scaled: top of page 9:
The aggregated log-ratios for each sample are normalized by subtracting the median from all genes’ values. The before-normalization sample median, mean, and standard deviation are provided in the first three rows of the report
Is there a way to get the "before-normalization" median/median/mean using the API?
Currently I end up downloading the file available on the portal, which isn't the biggest deal in the world, but it'd be neat if I could do all of what I am doing via API calls and do without the extra file.
To my understanding, the summary report created by CDAP that correspond to the log2 TMT ratios are median-scaled: top of page 9:
The aggregated log-ratios for each sample are normalized by subtracting the median from all genes’ values. The before-normalization sample median, mean, and standard deviation are provided in the first three rows of the reportI believe the values that are obtainable from the API correspond to these scaled values.
Is there a way to get the "before-normalization" median/median/mean using the API?
Currently I end up downloading the file available on the portal, which isn't the biggest deal in the world, but it'd be neat if I could do all of what I am doing via API calls and do without the extra file.