alt setup

[drcandacemakedamoore]

The environment works for everything! But unfortunately my machine would not let me build it in the instructed way, so I'm adding an alternative that worked for me

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:stopwatch: Updated at 2024-09-04 09:03:14 +0000

[drcandacemakedamoore]

@gcroci2 I think I found the problem. the command you wrote for me just points to the html page, not the actual yaml file. If I use the file ie. mamba env create -f https://raw.githubusercontent.com/esciencecenter-digital-skills/medical-image-processing/main/learners/environment.yml, everything works just fine. If it works this way for you we can just change it to this. The traceback was mostly uninformative, and I figured it out another way, but maybe it says something to you: # >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

Traceback (most recent call last):
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\conda\exception_handler.py", line 17, in __call__
    return func(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\conda_env\cli\main.py", line 56, in do_call
    exit_code = getattr(module, func_name)(arguments, parser)
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\conda\notices\core.py", line 119, in wrapper
    return_value = func(*args, **kwargs)
                   ^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\conda_env\cli\main_create.py", line 107, in execute
    spec = specs.detect(
           ^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\conda_env\specs\__init__.py", line 72, in detect
    if spec.can_handle():
       ^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\conda_env\specs\yaml_file.py", line 19, in can_handle
    self._environment = env.from_file(self.filename)
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\conda_env\env.py", line 191, in from_file
    return from_yaml(yamlstr, filename=filename)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\conda_env\env.py", line 158, in from_yaml
    data = yaml_safe_load(yamlstr)
           ^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\conda\common\serialize.py", line 45, in yaml_safe_load
    return _yaml_safe().load(string)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\ruamel\yaml\main.py", line 434, in load
    return constructor.get_single_data()
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\ruamel\yaml\constructor.py", line 119, in get_single_data
    node = self.composer.get_single_node()
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\ruamel\yaml\composer.py", line 76, in get_single_node
    document = self.compose_document()
               ^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\ruamel\yaml\composer.py", line 102, in compose_document
    self.parser.get_event()
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\ruamel\yaml\parser.py", line 168, in get_event
    self.current_event = self.state()
                         ^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\ruamel\yaml\parser.py", line 253, in parse_document_end
    token = self.scanner.peek_token()
            ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\ruamel\yaml\scanner.py", line 188, in peek_token
    self.fetch_more_tokens()
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\ruamel\yaml\scanner.py", line 288, in fetch_more_tokens
    return self.fetch_value()
           ^^^^^^^^^^^^^^^^^^
  File "C:\Users\CandaceMoore\miniconda3\Lib\site-packages\ruamel\yaml\scanner.py", line 657, in fetch_value
    raise ScannerError(
ruamel.yaml.scanner.ScannerError: mapping values are not allowed here
  in "<unicode string>", line 231, column 75:
     ... age-responsive" style="word-wrap: break-word;">
                                         ^ (line: 231)

$ C:\Users\CandaceMoore\miniconda3\Scripts\mamba create -f https://github.com/esciencecenter-digital-skills/medical-image-processing/blob/main/learners/environment.yml

environment variables: ACLOCAL_PATH=C:\Users\CandaceMoore\AppData\Local\Programs\Git\mingw64\share\aclocal ;C:\Users\CandaceMoore\AppData\Local\Programs\Git\usr\share\aclocal CIO_TEST= CONDA_AUTO_UPDATE_CONDA=false CONDA_DEFAULT_ENV=base CONDA_EXE=C:/Users/CandaceMoore/miniconda3/Scripts/conda.exe CONDA_PREFIX=C:\Users\CandaceMoore\miniconda3 CONDA_PROMPT_MODIFIER=(base) CONDA_PYTHON_EXE=C:/Users/CandaceMoore/miniconda3/python.exe CONDA_ROOT=C:\Users\CandaceMoore\miniconda3 CONDA_SHLVL=1 CURL_CA_BUNDLE= EXEPATH=C:\Users\CandaceMoore\AppData\Local\Programs\Git\bin HOMEPATH=\Users\CandaceMoore INFOPATH=C:\Users\CandaceMoore\AppData\Local\Programs\Git\mingw64\local\info;C: \Users\CandaceMoore\AppData\Local\Programs\Git\mingw64\share\info;C:\U sers\CandaceMoore\AppData\Local\Programs\Git\usr\local\info;C:\Users\C andaceMoore\AppData\Local\Programs\Git\usr\share\info;C:\Users\Candace Moore\AppData\Local\Programs\Git\usr\info;C:\Users\CandaceMoore\AppDat a\Local\Programs\Git\share\info LD_PRELOAD= MANPATH=C:\Users\CandaceMoore\AppData\Local\Programs\Git\mingw64\local\man;C:\ Users\CandaceMoore\AppData\Local\Programs\Git\mingw64\share\man;C:\Use rs\CandaceMoore\AppData\Local\Programs\Git\usr\local\man;C:\Users\Cand aceMoore\AppData\Local\Programs\Git\usr\share\man;C:\Users\CandaceMoor e\AppData\Local\Programs\Git\usr\man;C:\Users\CandaceMoore\AppData\Loc al\Programs\Git\share\man ORIGINAL_PATH=C:\Users\CandaceMoore\AppData\Local\Programs\Git\mingw64\bin;C:\Users\ CandaceMoore\AppData\Local\Programs\Git\usr\bin;C:\Users\CandaceMoore\ bin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows \System32\WindowsPowerShell\v1.0;C:\Windows\System32\OpenSSH;C:\Progra m Files\dotnet;C:\Ruby33- x64\bin;C:\Users\CandaceMoore\AppData\Local\Programs\Python\Launcher;C :\Users\CandaceMoore\AppData\Local\Microsoft\WindowsApps;C:\Users\Cand aceMoore\AppData\Local\Programs\Microsoft VS Code\bin;C:\Users\Candace Moore\AppData\Local\Programs\Git\cmd;C:\users\candacemoore.local\bin; C:\users\candacemoore\appdata\roaming\python\python312\scripts;C:\user s\candacemoore\appdata\local\packages\pythonsoftwarefoundation.python. 3.11_qbz5n2kfra8p0\localcache\local-packages\python311\scripts PATH=C:\Users\CandaceMoore\miniconda3;C:\Users\CandaceMoore\miniconda3\Libr ary\mingw- w64\bin;C:\Users\CandaceMoore\miniconda3\Library\usr\bin;C:\Users\Cand aceMoore\miniconda3\Library\bin;C:\Users\CandaceMoore\miniconda3\Scrip ts;C:\Users\CandaceMoore\miniconda3\bin;C:\Users\CandaceMoore\minicond a3\condabin;C:\Users\CandaceMoore\bin;C:\Users\CandaceMoore\AppData\Lo cal\Programs\Git\mingw64\bin;C:\Users\CandaceMoore\AppData\Local\Progr ams\Git\usr\local\bin;C:\Users\CandaceMoore\AppData\Local\Programs\Git \usr\bin;C:\Users\CandaceMoore\AppData\Local\Programs\Git\usr\bin;C:\U sers\CandaceMoore\AppData\Local\Programs\Git\mingw64\bin;C:\Users\Cand aceMoore\AppData\Local\Programs\Git\usr\bin;C:\Users\CandaceMoore\bin; C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\Sys tem32\WindowsPowerShell\v1.0;C:\Windows\System32\OpenSSH;C:\Program Fi les\dotnet;C:\Ruby33- x64\bin;C:\Users\CandaceMoore\AppData\Local\Programs\Python\Launcher;C :\Users\CandaceMoore\AppData\Local\Microsoft\WindowsApps;C:\Users\Cand aceMoore\AppData\Local\Programs\Microsoft VS Code\bin;C:\Users\Candace Moore\AppData\Local\Programs\Git\cmd;C:\users\candacemoore.local\bin; C:\users\candacemoore\appdata\roaming\python\python312\scripts;C:\user s\candacemoore\appdata\local\packages\pythonsoftwarefoundation.python. 3.11_qbz5n2kfra8p0\localcache\local-packages\python311\scripts;C:\User s\CandaceMoore\AppData\Local\Programs\Git\usr\bin\vendor_perl;C:\Users \CandaceMoore\AppData\Local\Programs\Git\usr\bin\core_perl PKG_CONFIG_PATH=C:\Users\CandaceMoore\AppData\Local\Programs\Git\mingw64\lib\pkgconfig ;C:\Users\CandaceMoore\AppData\Local\Programs\Git\mingw64\share\pkgcon fig PKG_CONFIG_SYSTEM_INCLUDE_PATH=C:/Users/CandaceMoore/AppData/Local/Programs/Git/mingw64/include PKG_CONFIG_SYSTEM_LIBRARY_PATH=C:/Users/CandaceMoore/AppData/Local/Programs/Git/mingw64/lib PSMODULEPATH=C:\Program Files\WindowsPowerShell\Modules;C:\Windows\system32\Windows PowerShell\v1.0\Modules REQUESTS_CA_BUNDLE= SSL_CERT_FILE=

 active environment : base
active env location : C:\Users\CandaceMoore\miniconda3
        shell level : 1
   user config file : C:\Users\CandaceMoore\.condarc

populated config files : conda version : 23.11.0 conda-build version : not installed python version : 3.11.5.final.0 solver : libmamba (default) virtual packages : __archspec=1=x86_64 conda=23.11.0=0 win=0=0 base environment : C:\Users\CandaceMoore\miniconda3 (writable) conda av data dir : C:\Users\CandaceMoore\miniconda3\etc\conda conda av metadata url : None channel URLs : https://repo.anaconda.com/pkgs/main/win-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/win-64 https://repo.anaconda.com/pkgs/r/noarch https://repo.anaconda.com/pkgs/msys2/win-64 https://repo.anaconda.com/pkgs/msys2/noarch package cache : C:\Users\CandaceMoore\miniconda3\pkgs C:\Users\CandaceMoore.conda\pkgs C:\Users\CandaceMoore\AppData\Local\conda\conda\pkgs envs directories : C:\Users\CandaceMoore\miniconda3\envs C:\Users\CandaceMoore.conda\envs C:\Users\CandaceMoore\AppData\Local\conda\conda\envs platform : win-64 user-agent : conda/23.11.0 requests/2.31.0 CPython/3.11.5 Windows/10 Windows/10.0.22631 solver/libmamba conda-libmamba-solver/23.11.1 libmambapy/1.5.3 administrator : False netrc file : None offline mode : False

An unexpected error has occurred. Conda has prepared the above report. If you suspect this error is being caused by a malfunctioning plugin, consider using the --no-plugins option to turn off plugins.

Example: conda --no-plugins install

Alternatively, you can set the CONDA_NO_PLUGINS environment variable on the command line to run the command without plugins enabled.

Example: CONDA_NO_PLUGINS=true conda install