Closed edsml-cg1123 closed 1 year ago
marijanbeg
commented
1 year ago Hi @edsml-72da475c, thank you for raising the issue. Have you created the conda environment and installed all dependencies (step 3 in installation instructions). Also, please ensure you start Jupyter from the right conda environment.
edsml-cg1123
commented
1 year ago Yes, I followed all the instructions in step 3. For reference, here is the result of the conda info command on the mac terminal
Chandrasekhars-MacBook-Pro:introduction-to-python gudipati$ conda info
active environment : None
user config file : /Users/gudipati/.condarc
populated config files : /Users/gudipati/.condarc
conda version : 23.7.2
conda-build version : 3.26.0
python version : 3.11.4.final.0
virtual packages : __archspec=1=x86_64
__osx=10.16=0
__unix=0=0
base environment : /Users/gudipati/anaconda3 (writable)
conda av data dir : /Users/gudipati/anaconda3/etc/conda
conda av metadata url : None
channel URLs : https://repo.anaconda.com/pkgs/main/osx-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/osx-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /Users/gudipati/anaconda3/pkgs
/Users/gudipati/.conda/pkgs
envs directories : /Users/gudipati/anaconda3/envs
/Users/gudipati/.conda/envs
platform : osx-64
user-agent : conda/23.7.2 requests/2.31.0 CPython/3.11.4 Darwin/21.6.0 OSX/10.16
UID:GID : 501:20
netrc file : None
offline mode : FalseFor more context, here are chunks of the code I used for step 3
Chandrasekhars-MacBook-Pro:~ gudipati$ echo 'PATH="/usr/local/bin:$PATH"' >> ~/.bash_profile
Chandrasekhars-MacBook-Pro:~ gudipati$ brew doctor
Your system is ready to brew.
Chandrasekhars-MacBook-Pro:~ gudipati$ brew install git
==> Downloading https://formulae.brew.sh/api/formula.jws.json
######################################################################### 100.0%
==> Downloading https://formulae.brew.sh/api/cask.jws.json
##O#- #
==> Fetching dependencies for git: gettext and pcre2
==> Fetching gettext
==> Downloading https://ghcr.io/v2/homebrew/core/gettext/manifests/0.21.1
######################################################################### 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/gettext/blobs/sha256:9318777367
######################################################################### 100.0%
==> Fetching pcre2
==> Downloading https://ghcr.io/v2/homebrew/core/pcre2/manifests/10.42
######################################################################### 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/pcre2/blobs/sha256:76ccbd45954e
######################################################################### 100.0%
==> Fetching git
==> Downloading https://ghcr.io/v2/homebrew/core/git/manifests/2.41.0_2-1
######################################################################### 100.0%
==> Downloading https://ghcr.io/v2/homebrew/core/git/blobs/sha256:36cb8b459b3ac1
######################################################################### 100.0%
==> Installing dependencies for git: gettext and pcre2
==> Installing git dependency: gettext
==> Pouring gettext--0.21.1.monterey.bottle.tar.gz
🍺 /usr/local/Cellar/gettext/0.21.1: 1,983 files, 20.6MB
==> Installing git dependency: pcre2
==> Pouring pcre2--10.42.monterey.bottle.tar.gz
🍺 /usr/local/Cellar/pcre2/10.42: 230 files, 6.4MB
==> Installing git
==> Pouring git--2.41.0_2.monterey.bottle.1.tar.gz
==> Caveats
The Tcl/Tk GUIs (e.g. gitk, git-gui) are now in the `git-gui` formula.
Subversion interoperability (git-svn) is now in the `git-svn` formula.
Bash completion has been installed to:
/usr/local/etc/bash_completion.d
==> Summary
🍺 /usr/local/Cellar/git/2.41.0_2: 1,633 files, 48.8MB
==> Running `brew cleanup git`...
Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP.
Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
==> Caveats
==> git
The Tcl/Tk GUIs (e.g. gitk, git-gui) are now in the `git-gui` formula.
Subversion interoperability (git-svn) is now in the `git-svn` formula.Chandrasekhars-MacBook-Pro:Desktop gudipati$ cd '/Users/gudipati/Desktop/Imperial College London/Pre Course Tasks'
Chandrasekhars-MacBook-Pro:Pre Course Tasks gudipati$ git clone https://github.com/ese-msc/introduction-to-python
Cloning into 'introduction-to-python'...
remote: Enumerating objects: 367, done.
remote: Counting objects: 100% (215/215), done.
remote: Compressing objects: 100% (98/98), done.
remote: Total 367 (delta 134), reused 149 (delta 117), pack-reused 152
Receiving objects: 100% (367/367), 458.23 KiB | 2.73 MiB/s, done.
Resolving deltas: 100% (216/216), done.Chandrasekhars-MacBook-Pro:Pre Course Tasks gudipati$ cd '/Users/gudipati/Desktop/Imperial College London/Pre Course Tasks/introduction-to-python'
Chandrasekhars-MacBook-Pro:introduction-to-python gudipati$ conda env create -f environment.yml
Collecting package metadata (repodata.json): done
Solving environment: doneconda activate was failing for some weird reason so i had to resort to source activate)Chandrasekhars-MacBook-Pro:introduction-to-python gudipati$ source activate introduction-to-python
(introduction-to-python) Chandrasekhars-MacBook-Pro:introduction-to-python gudipati$ jupyter notebook &
[1] 23050Could you please send us the output of the following two commands in your terminal:
conda list
pip freezePlease find the outputs of the commands conda list and pip freeze below
conda list
# packages in environment at /Users/gudipati/anaconda3/envs/introduction-to-python:
#
# Name Version Build Channel
anyio 3.7.1 pypi_0 pypi
appnope 0.1.3 pypi_0 pypi
argon2-cffi 23.1.0 pypi_0 pypi
argon2-cffi-bindings 21.2.0 pypi_0 pypi
arrow 1.2.3 pypi_0 pypi
asttokens 2.2.1 pypi_0 pypi
astunparse 1.6.3 pypi_0 pypi
async-lru 2.0.4 pypi_0 pypi
attrs 23.1.0 pypi_0 pypi
babel 2.12.1 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
beautifulsoup4 4.12.2 pypi_0 pypi
bleach 6.0.0 pypi_0 pypi
bzip2 1.0.8 h1de35cc_0
ca-certificates 2023.05.30 hecd8cb5_0
certifi 2023.7.22 pypi_0 pypi
cffi 1.15.1 pypi_0 pypi
charset-normalizer 3.2.0 pypi_0 pypi
click 8.1.7 pypi_0 pypi
comm 0.1.4 pypi_0 pypi
contourpy 1.1.0 pypi_0 pypi
cycler 0.11.0 pypi_0 pypi
cython 3.0.0 pypi_0 pypi
debugpy 1.6.7.post1 pypi_0 pypi
decorator 5.1.1 pypi_0 pypi
defusedxml 0.7.1 pypi_0 pypi
dill 0.3.7 pypi_0 pypi
exceptiongroup 1.1.3 pypi_0 pypi
executing 1.2.0 pypi_0 pypi
fastjsonschema 2.18.0 pypi_0 pypi
fonttools 4.42.1 pypi_0 pypi
fqdn 1.5.1 pypi_0 pypi
idna 3.4 pypi_0 pypi
iniconfig 2.0.0 pypi_0 pypi
ipykernel 6.25.1 pypi_0 pypi
ipython 8.14.0 pypi_0 pypi
isoduration 20.11.0 pypi_0 pypi
jedi 0.19.0 pypi_0 pypi
jinja2 3.1.2 pypi_0 pypi
json5 0.9.14 pypi_0 pypi
jsonpointer 2.4 pypi_0 pypi
jsonschema 4.19.0 pypi_0 pypi
jsonschema-specifications 2023.7.1 pypi_0 pypi
jupyter-client 8.3.0 pypi_0 pypi
jupyter-core 5.3.1 pypi_0 pypi
jupyter-events 0.7.0 pypi_0 pypi
jupyter-lsp 2.2.0 pypi_0 pypi
jupyter-server 2.7.2 pypi_0 pypi
jupyter-server-terminals 0.4.4 pypi_0 pypi
jupyterlab 4.0.5 pypi_0 pypi
jupyterlab-pygments 0.2.2 pypi_0 pypi
jupyterlab-server 2.24.0 pypi_0 pypi
kiwisolver 1.4.4 pypi_0 pypi
libffi 3.4.4 hecd8cb5_0
markupsafe 2.1.3 pypi_0 pypi
matplotlib 3.7.2 pypi_0 pypi
matplotlib-inline 0.1.6 pypi_0 pypi
mistune 3.0.1 pypi_0 pypi
nbclient 0.8.0 pypi_0 pypi
nbconvert 7.7.4 pypi_0 pypi
nbformat 5.9.2 pypi_0 pypi
ncurses 6.4 hcec6c5f_0
nest-asyncio 1.5.7 pypi_0 pypi
notebook-shim 0.2.3 pypi_0 pypi
numpy 1.25.2 pypi_0 pypi
okpy 1.7.2 pypi_0 pypi
openssl 3.0.10 hca72f7f_0
overrides 7.4.0 pypi_0 pypi
packaging 23.1 pypi_0 pypi
pandas 2.0.3 pypi_0 pypi
pandocfilters 1.5.0 pypi_0 pypi
parso 0.8.3 pypi_0 pypi
pendulum 2.1.2 pypi_0 pypi
pexpect 4.8.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 10.0.0 pypi_0 pypi
pip 23.2.1 py310hecd8cb5_0
platformdirs 3.10.0 pypi_0 pypi
pluggy 1.2.0 pypi_0 pypi
prometheus-client 0.17.1 pypi_0 pypi
prompt-toolkit 3.0.39 pypi_0 pypi
psutil 5.9.5 pypi_0 pypi
ptyprocess 0.7.0 pypi_0 pypi
pure-eval 0.2.2 pypi_0 pypi
pybryt 0.7.0 pypi_0 pypi
pycparser 2.21 pypi_0 pypi
pygments 2.16.1 pypi_0 pypi
pyparsing 3.0.9 pypi_0 pypi
pytest 7.4.0 pypi_0 pypi
python 3.10.12 h5ee71fb_0
python-dateutil 2.8.2 pypi_0 pypi
python-json-logger 2.0.7 pypi_0 pypi
pytz 2023.3 pypi_0 pypi
pytzdata 2020.1 pypi_0 pypi
pyyaml 6.0.1 pypi_0 pypi
pyzmq 25.1.1 pypi_0 pypi
readline 8.2 hca72f7f_0
referencing 0.30.2 pypi_0 pypi
requests 2.31.0 pypi_0 pypi
rfc3339-validator 0.1.4 pypi_0 pypi
rfc3986-validator 0.1.1 pypi_0 pypi
rpds-py 0.9.2 pypi_0 pypi
send2trash 1.8.2 pypi_0 pypi
setuptools 68.0.0 py310hecd8cb5_0
six 1.16.0 pypi_0 pypi
sniffio 1.3.0 pypi_0 pypi
soupsieve 2.4.1 pypi_0 pypi
sqlite 3.41.2 h6c40b1e_0
stack-data 0.6.2 pypi_0 pypi
terminado 0.17.1 pypi_0 pypi
tinycss2 1.2.1 pypi_0 pypi
tk 8.6.12 h5d9f67b_0
tomli 2.0.1 pypi_0 pypi
tornado 6.3.3 pypi_0 pypi
traitlets 5.9.0 pypi_0 pypi
typing-extensions 4.7.1 pypi_0 pypi
tzdata 2023.3 pypi_0 pypi
uri-template 1.3.0 pypi_0 pypi
urllib3 2.0.4 pypi_0 pypi
wcwidth 0.2.6 pypi_0 pypi
webcolors 1.13 pypi_0 pypi
webencodings 0.5.1 pypi_0 pypi
websocket-client 1.6.1 pypi_0 pypi
wheel 0.38.4 py310hecd8cb5_0
xz 5.4.2 h6c40b1e_0
zlib 1.2.13 h4dc903c_0(introduction-to-python) Chandrasekhars-MacBook-Pro:introduction-to-python gudipati$ pip freeze
anyio==3.7.1
appnope==0.1.3
argon2-cffi==23.1.0
argon2-cffi-bindings==21.2.0
arrow==1.2.3
asttokens==2.2.1
astunparse==1.6.3
async-lru==2.0.4
attrs==23.1.0
Babel==2.12.1
backcall==0.2.0
beautifulsoup4==4.12.2
bleach==6.0.0
certifi==2023.7.22
cffi==1.15.1
charset-normalizer==3.2.0
click==8.1.7
comm==0.1.4
contourpy==1.1.0
cycler==0.11.0
Cython==3.0.0
debugpy==1.6.7.post1
decorator==5.1.1
defusedxml==0.7.1
dill==0.3.7
exceptiongroup==1.1.3
executing==1.2.0
fastjsonschema==2.18.0
fonttools==4.42.1
fqdn==1.5.1
idna==3.4
iniconfig==2.0.0
ipykernel==6.25.1
ipython==8.14.0
isoduration==20.11.0
jedi==0.19.0
Jinja2==3.1.2
json5==0.9.14
jsonpointer==2.4
jsonschema==4.19.0
jsonschema-specifications==2023.7.1
jupyter-events==0.7.0
jupyter-lsp==2.2.0
jupyter_client==8.3.0
jupyter_core==5.3.1
jupyter_server==2.7.2
jupyter_server_terminals==0.4.4
jupyterlab==4.0.5
jupyterlab-pygments==0.2.2
jupyterlab_server==2.24.0
kiwisolver==1.4.4
MarkupSafe==2.1.3
matplotlib==3.7.2
matplotlib-inline==0.1.6
mistune==3.0.1
nbclient==0.8.0
nbconvert==7.7.4
nbformat==5.9.2
nest-asyncio==1.5.7
notebook_shim==0.2.3
numpy==1.25.2
okpy==1.7.2
overrides==7.4.0
packaging==23.1
pandas==2.0.3
pandocfilters==1.5.0
parso==0.8.3
pendulum==2.1.2
pexpect==4.8.0
pickleshare==0.7.5
Pillow==10.0.0
platformdirs==3.10.0
pluggy==1.2.0
prometheus-client==0.17.1
prompt-toolkit==3.0.39
psutil==5.9.5
ptyprocess==0.7.0
pure-eval==0.2.2
pybryt==0.7.0
pycparser==2.21
Pygments==2.16.1
pyparsing==3.0.9
pytest==7.4.0
python-dateutil==2.8.2
python-json-logger==2.0.7
pytz==2023.3
pytzdata==2020.1
PyYAML==6.0.1
pyzmq==25.1.1
referencing==0.30.2
requests==2.31.0
rfc3339-validator==0.1.4
rfc3986-validator==0.1.1
rpds-py==0.9.2
Send2Trash==1.8.2
six==1.16.0
sniffio==1.3.0
soupsieve==2.4.1
stack-data==0.6.2
terminado==0.17.1
tinycss2==1.2.1
tomli==2.0.1
tornado==6.3.3
traitlets==5.9.0
typing_extensions==4.7.1
tzdata==2023.3
uri-template==1.3.0
urllib3==2.0.4
wcwidth==0.2.6
webcolors==1.13
webencodings==0.5.1
websocket-client==1.6.1From the output you sent us, PyBryt is installed. Could you please ensure you start the notebook from the right conda environment?
edsml-cg1123
commented
1 year ago I have a fix that is working at least for now:
The code seems to be working if i simply replace !pip install pybryt with %pip install pybryt. I don't fully understand why this fixes the problem, but my best guess is that it might have something to do with the location where the module files are being installed. In the case of %pip install, the files are being saved in the same location as the sys.executable address. This is not the case with !pip install. I will update this thread in case there are further complications within the same issue, especially if pybryt has issues with detecting my errors, but I believe this should be a viable solution.
Thank you so much for helping me out @marijanbeg ! I am super excited to get started with the exercises!!!
marijanbeg
commented
1 year ago Thank you for letting us know @edsml-72da475c.
Hello! I have started working on the first assignment on a macbook pro (early 2015). Whilst running the very first cell, I get the error:
ModuleNotFoundError: No module named 'pybryt'I have tried inline!pip install pybrytas shown in the image belowHowever, the error still persists. I'm not quite sure what I'm missing here, since the pip installation happened successfully.