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esilgard / argos_nlp

main repository for the argos/hidra nlp engine
Apache License 2.0
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Substance detection #37

Closed abbottLane-zz closed 7 years ago

abbottLane-zz commented 7 years ago

Updated and streamlined substance abuse execution pipeline

abbottLane-zz commented 7 years ago

This is the latest version of the substance abuse execution pipeline. In addition to adding crfSuite, improved and unified preprocessing, probability retrieval, SQL query redo, (and lots more) I've successfully separated out train/test pipelines into a separate project.

esilgard commented 7 years ago

looks like there's still a reference to a data directory on your file system - it'd probably be a better idea to reference a 'model' or 'data' directory within the fhcrc_clinical directory and just call in in documentation that people have to have models in that spot to run the program - otherwise it means having to change the actual code in order to run in different environments