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eskederks / eMAGMA-tutorial

A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
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Angela mina vargas patch 1 #2

Closed AngelaMinaVargas closed 4 years ago

AngelaMinaVargas commented 4 years ago

Preliminary Steps: Set a working directory and download the version of that suits your OS, for this tutorial use Linux 64bits.

    -mkdir [depression_test2]
    -wget https://ctg.cncr.nl/software/MAGMA/prog/magma_v1.07b.zip

(for all files download you could use curl i,e -curl https://ctg.cncr.nl/software/MAGMA/prog/magma_v1.07b.zip)

Get Auxiliary files: Gene locations build 38 & reference data Europeans

    -wget https://ctg.cncr.nl/software/MAGMA/aux_files/NCBI38.zip

    -wget https://ctg.cncr.nl/software/MAGMA/ref_data/g1000_eur.zip