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esqLABS / esqlabsR

Utility functions for modelling and simulation workflows within esqLABS organization
https://esqlabs.github.io/esqlabsR/
GNU General Public License v2.0
18 stars 2 forks source link

`install-packages´ does not work #713

Open PavelBal opened 1 month ago

PavelBal commented 1 month ago

Trying to set up local project and got this error:

Installing package into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
(as ‘lib’ is unspecified)
Error: evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted
✔ Install esqlabsR and dependencies [2m 53.4s]
Error in library("esqlabsR") : there is no package called ‘esqlabsR’
In addition: There were 45 warnings (use warnings() to see them)
✖ Load esqlabsR [51ms]

Here the full output:

> source("~/xxx/V00.01/Code/DoNotSource/install-packages.R")
Where do you want to install {esqlabsR} and other packages? 

1: In local environment (available for one project)
2: In Global environment (available for all projects)

Selection: 1
Install prerequisite dependencies
Installing package into ‘C:/Users/xxx/AppData/Local/R/win-library/4.4’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/renv_1.0.9.zip'
Content type 'application/zip' length 2198213 bytes (2.1 MB)
downloaded 2.1 MB

package ‘renv’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
    C:\Temp\RtmpAJ9U5n\downloaded_packages
Loading required package: renv

Attaching package: ‘renv’

The following objects are masked from ‘package:stats’:

    embed, update

The following objects are masked from ‘package:utils’:

    history, upgrade

The following objects are masked from ‘package:base’:

    autoload, load, remove, use

- Project '~' loaded. [renv 1.0.9]
- The project is out-of-sync -- use `renv::status()` for details.
also installing the dependencies ‘sys’, ‘askpass’, ‘rappdirs’, ‘lazyeval’, ‘curl’, ‘mime’, ‘openssl’, ‘cachem’, ‘memoise’, ‘sass’, ‘fs’, ‘pkgbuild’, ‘diffobj’, ‘rematch2’, ‘utf8’, ‘R6’, ‘jsonlite’, ‘rex’, ‘httr’, ‘yaml’, ‘base64enc’, ‘fastmap’, ‘evaluate’, ‘highr’, ‘xfun’, ‘bslib’, ‘fontawesome’, ‘jquerylib’, ‘tinytex’, ‘brio’, ‘desc’, ‘lifecycle’, ‘magrittr’, ‘pkgload’, ‘praise’, ‘waldo’, ‘fansi’, ‘pillar’, ‘pkgconfig’, ‘vctrs’, ‘callr’, ‘covr’, ‘crayon’, ‘digest’, ‘glue’, ‘htmltools’, ‘htmlwidgets’, ‘knitr’, ‘mockery’, ‘processx’, ‘ps’, ‘rlang’, ‘rmarkdown’, ‘rprojroot’, ‘rstudioapi’, ‘testthat’, ‘tibble’, ‘whoami’, ‘withr’

package ‘sys’ successfully unpacked and MD5 sums checked
package ‘askpass’ successfully unpacked and MD5 sums checked
package ‘rappdirs’ successfully unpacked and MD5 sums checked
package ‘lazyeval’ successfully unpacked and MD5 sums checked
package ‘curl’ successfully unpacked and MD5 sums checked
package ‘mime’ successfully unpacked and MD5 sums checked
package ‘openssl’ successfully unpacked and MD5 sums checked
package ‘cachem’ successfully unpacked and MD5 sums checked
package ‘memoise’ successfully unpacked and MD5 sums checked
package ‘sass’ successfully unpacked and MD5 sums checked
package ‘fs’ successfully unpacked and MD5 sums checked
package ‘pkgbuild’ successfully unpacked and MD5 sums checked
package ‘diffobj’ successfully unpacked and MD5 sums checked
package ‘rematch2’ successfully unpacked and MD5 sums checked
package ‘utf8’ successfully unpacked and MD5 sums checked
package ‘R6’ successfully unpacked and MD5 sums checked
package ‘jsonlite’ successfully unpacked and MD5 sums checked
package ‘rex’ successfully unpacked and MD5 sums checked
package ‘httr’ successfully unpacked and MD5 sums checked
package ‘yaml’ successfully unpacked and MD5 sums checked
package ‘base64enc’ successfully unpacked and MD5 sums checked
package ‘fastmap’ successfully unpacked and MD5 sums checked
package ‘evaluate’ successfully unpacked and MD5 sums checked
package ‘highr’ successfully unpacked and MD5 sums checked
package ‘xfun’ successfully unpacked and MD5 sums checked
package ‘bslib’ successfully unpacked and MD5 sums checked
package ‘fontawesome’ successfully unpacked and MD5 sums checked
package ‘jquerylib’ successfully unpacked and MD5 sums checked
package ‘tinytex’ successfully unpacked and MD5 sums checked
package ‘brio’ successfully unpacked and MD5 sums checked
package ‘desc’ successfully unpacked and MD5 sums checked
package ‘lifecycle’ successfully unpacked and MD5 sums checked
package ‘magrittr’ successfully unpacked and MD5 sums checked
package ‘pkgload’ successfully unpacked and MD5 sums checked
package ‘praise’ successfully unpacked and MD5 sums checked
package ‘waldo’ successfully unpacked and MD5 sums checked
package ‘fansi’ successfully unpacked and MD5 sums checked
package ‘pillar’ successfully unpacked and MD5 sums checked
package ‘pkgconfig’ successfully unpacked and MD5 sums checked
package ‘vctrs’ successfully unpacked and MD5 sums checked
package ‘callr’ successfully unpacked and MD5 sums checked
package ‘covr’ successfully unpacked and MD5 sums checked
package ‘crayon’ successfully unpacked and MD5 sums checked
package ‘digest’ successfully unpacked and MD5 sums checked
package ‘glue’ successfully unpacked and MD5 sums checked
package ‘htmltools’ successfully unpacked and MD5 sums checked
package ‘htmlwidgets’ successfully unpacked and MD5 sums checked
package ‘knitr’ successfully unpacked and MD5 sums checked
package ‘mockery’ successfully unpacked and MD5 sums checked
package ‘processx’ successfully unpacked and MD5 sums checked
package ‘ps’ successfully unpacked and MD5 sums checked
package ‘rlang’ successfully unpacked and MD5 sums checked
package ‘rmarkdown’ successfully unpacked and MD5 sums checked
package ‘rprojroot’ successfully unpacked and MD5 sums checked
package ‘rstudioapi’ successfully unpacked and MD5 sums checked
package ‘testthat’ successfully unpacked and MD5 sums checked
package ‘tibble’ successfully unpacked and MD5 sums checked
package ‘whoami’ successfully unpacked and MD5 sums checked
package ‘withr’ successfully unpacked and MD5 sums checked
package ‘cli’ successfully unpacked and MD5 sums checked
also installing the dependencies ‘brew’, ‘git2r’, ‘pingr’, ‘webfakes’

package ‘brew’ successfully unpacked and MD5 sums checked
package ‘git2r’ successfully unpacked and MD5 sums checked
package ‘pingr’ successfully unpacked and MD5 sums checked
package ‘webfakes’ successfully unpacked and MD5 sums checked
package ‘remotes’ successfully unpacked and MD5 sums checked
✔ Install prerequisite dependencies
✔ Verify RTools installation [70ms]
Using GitHub PAT from the git credential store.
Downloading GitHub repo esqLABS/esqlabsR@v5.2.0
ospsuite.... (NA -> 940a4da26...) [GitHub]
tlf          (NA -> 68df1f5be...) [GitHub]
ospsuite     (NA -> aedb53337...) [GitHub]
ospsuite.... (NA -> 365603eea...) [GitHub]
stringi      (NA -> 1.8.4       ) [CRAN]
tidyselect   (NA -> 1.2.1       ) [CRAN]
generics     (NA -> 0.1.3       ) [CRAN]
colorspace   (NA -> 2.1-1       ) [CRAN]
prettyunits  (NA -> 1.2.0       ) [CRAN]
hms          (NA -> 1.1.3       ) [CRAN]
rematch      (NA -> 2.0.0       ) [CRAN]
viridisLite  (NA -> 0.4.2       ) [CRAN]
RColorBrewer (NA -> 1.1-3       ) [CRAN]
munsell      (NA -> 0.5.1       ) [CRAN]
labeling     (NA -> 0.4.3       ) [CRAN]
farver       (NA -> 2.1.2       ) [CRAN]
scales       (NA -> 1.3.0       ) [CRAN]
isoband      (NA -> 0.2.7       ) [CRAN]
gtable       (NA -> 0.3.5       ) [CRAN]
cpp11        (NA -> 0.5.0       ) [CRAN]
stringr      (NA -> 1.5.1       ) [CRAN]
purrr        (NA -> 1.0.2       ) [CRAN]
dplyr        (NA -> 1.1.4       ) [CRAN]
progress     (NA -> 1.2.3       ) [CRAN]
cellranger   (NA -> 1.1.0       ) [CRAN]
ggplot2      (NA -> 3.5.1       ) [CRAN]
writexl      (NA -> 1.5.0       ) [CRAN]
tidyr        (NA -> 1.3.1       ) [CRAN]
readxl       (NA -> 1.4.3       ) [CRAN]
patchwork    (NA -> 1.3.0       ) [CRAN]
Downloading GitHub repo Open-Systems-Pharmacology/OSPSuite.RUtils@HEAD
stringi (NA -> 1.8.4) [CRAN]
purrr   (NA -> 1.0.2) [CRAN]
Installing 2 packages: stringi, purrr
Installing packages into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/stringi_1.8.4.zip'
Content type 'application/zip' length 15027635 bytes (14.3 MB)
downloaded 14.3 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/purrr_1.0.2.zip'
Content type 'application/zip' length 511199 bytes (499 KB)
downloaded 499 KB

package ‘stringi’ successfully unpacked and MD5 sums checked
package ‘purrr’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
    C:\Temp\RtmpAJ9U5n\downloaded_packages
── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file 'C:\Temp\RtmpAJ9U5n\remotes55c838426995\Open-Systems-Pharmacology-OSPSuite.RUtils-940a4da/DESCRIPTION' ... 
─  preparing 'ospsuite.utils': (2.2s)
✔  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building 'ospsuite.utils_1.5.0.tar.gz'

Installing package into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
(as ‘lib’ is unspecified)
Error: evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted
Downloading GitHub repo Open-Systems-Pharmacology/TLF-Library@HEAD
colorspace   (NA -> 2.1-1 ) [CRAN]
viridisLite  (NA -> 0.4.2 ) [CRAN]
RColorBrewer (NA -> 1.1-3 ) [CRAN]
munsell      (NA -> 0.5.1 ) [CRAN]
labeling     (NA -> 0.4.3 ) [CRAN]
farver       (NA -> 2.1.2 ) [CRAN]
commonmark   (NA -> 1.9.1 ) [CRAN]
xml2         (NA -> 1.3.6 ) [CRAN]
stringr      (NA -> 1.5.1 ) [CRAN]
jpeg         (NA -> 0.1-10) [CRAN]
png          (NA -> 0.1-8 ) [CRAN]
Rcpp         (NA -> 1.0.13) [CRAN]
markdown     (NA -> 1.13  ) [CRAN]
scales       (NA -> 1.3.0 ) [CRAN]
isoband      (NA -> 0.2.7 ) [CRAN]
gtable       (NA -> 0.3.5 ) [CRAN]
gridtext     (NA -> 0.1.5 ) [CRAN]
ggplot2      (NA -> 3.5.1 ) [CRAN]
ggtext       (NA -> 0.1.2 ) [CRAN]
patchwork    (NA -> 1.3.0 ) [CRAN]
Skipping 1 packages not available: ospsuite.utils
Installing 21 packages: colorspace, viridisLite, RColorBrewer, munsell, labeling, farver, commonmark, xml2, stringr, jpeg, png, Rcpp, markdown, scales, isoband, gtable, gridtext, ggplot2, ggtext, patchwork, ospsuite.utils
Installing packages into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/colorspace_2.1-1.zip'
Content type 'application/zip' length 2665496 bytes (2.5 MB)
downloaded 2.5 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/viridisLite_0.4.2.zip'
Content type 'application/zip' length 1300836 bytes (1.2 MB)
downloaded 1.2 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/RColorBrewer_1.1-3.zip'
Content type 'application/zip' length 54471 bytes (53 KB)
downloaded 53 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/munsell_0.5.1.zip'
Content type 'application/zip' length 244599 bytes (238 KB)
downloaded 238 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/labeling_0.4.3.zip'
Content type 'application/zip' length 63169 bytes (61 KB)
downloaded 61 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/farver_2.1.2.zip'
Content type 'application/zip' length 1519642 bytes (1.4 MB)
downloaded 1.4 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/commonmark_1.9.1.zip'
Content type 'application/zip' length 142650 bytes (139 KB)
downloaded 139 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/xml2_1.3.6.zip'
Content type 'application/zip' length 1613568 bytes (1.5 MB)
downloaded 1.5 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/stringr_1.5.1.zip'
Content type 'application/zip' length 323914 bytes (316 KB)
downloaded 316 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/jpeg_0.1-10.zip'
Content type 'application/zip' length 157992 bytes (154 KB)
downloaded 154 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/png_0.1-8.zip'
Content type 'application/zip' length 194231 bytes (189 KB)
downloaded 189 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/Rcpp_1.0.13.zip'
Content type 'application/zip' length 2893010 bytes (2.8 MB)
downloaded 2.8 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/markdown_1.13.zip'
Content type 'application/zip' length 149715 bytes (146 KB)
downloaded 146 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/scales_1.3.0.zip'
Content type 'application/zip' length 716860 bytes (700 KB)
downloaded 700 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/isoband_0.2.7.zip'
Content type 'application/zip' length 1929307 bytes (1.8 MB)
downloaded 1.8 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/gtable_0.3.5.zip'
Content type 'application/zip' length 227408 bytes (222 KB)
downloaded 222 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/gridtext_0.1.5.zip'
Content type 'application/zip' length 674225 bytes (658 KB)
downloaded 658 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/ggplot2_3.5.1.zip'
Content type 'application/zip' length 5011841 bytes (4.8 MB)
downloaded 4.8 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/ggtext_0.1.2.zip'
Content type 'application/zip' length 1264918 bytes (1.2 MB)
downloaded 1.2 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/patchwork_1.3.0.zip'
Content type 'application/zip' length 3349656 bytes (3.2 MB)
downloaded 3.2 MB

package ‘colorspace’ successfully unpacked and MD5 sums checked
package ‘viridisLite’ successfully unpacked and MD5 sums checked
package ‘RColorBrewer’ successfully unpacked and MD5 sums checked
package ‘munsell’ successfully unpacked and MD5 sums checked
package ‘labeling’ successfully unpacked and MD5 sums checked
package ‘farver’ successfully unpacked and MD5 sums checked
package ‘commonmark’ successfully unpacked and MD5 sums checked
package ‘xml2’ successfully unpacked and MD5 sums checked
package ‘stringr’ successfully unpacked and MD5 sums checked
package ‘jpeg’ successfully unpacked and MD5 sums checked
package ‘png’ successfully unpacked and MD5 sums checked
package ‘Rcpp’ successfully unpacked and MD5 sums checked
package ‘markdown’ successfully unpacked and MD5 sums checked
package ‘scales’ successfully unpacked and MD5 sums checked
package ‘isoband’ successfully unpacked and MD5 sums checked
package ‘gtable’ successfully unpacked and MD5 sums checked
package ‘gridtext’ successfully unpacked and MD5 sums checked
package ‘ggplot2’ successfully unpacked and MD5 sums checked
package ‘ggtext’ successfully unpacked and MD5 sums checked
package ‘patchwork’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
    C:\Temp\RtmpAJ9U5n\downloaded_packages
── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file 'C:\Temp\RtmpAJ9U5n\remotes55c84a8c289\Open-Systems-Pharmacology-TLF-Library-68df1f5/DESCRIPTION'
─  preparing 'tlf': (391ms)
✔  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts (777ms)
─  checking for empty or unneeded directories
─  building 'tlf_1.5.0.tar.gz'

Installing package into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
(as ‘lib’ is unspecified)
Error: evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted
Downloading GitHub repo Open-Systems-Pharmacology/OSPSuite-R@HEAD
rSharp       (NA -> f33f2c009...) [GitHub]
ospsuite.... (NA -> 940a4da26...) [GitHub]
tlf          (NA -> 68df1f5be...) [GitHub]
sysfonts     (NA -> 0.8.9       ) [CRAN]
tidyselect   (NA -> 1.2.1       ) [CRAN]
generics     (NA -> 0.1.3       ) [CRAN]
cpp11        (NA -> 0.5.0       ) [CRAN]
prettyunits  (NA -> 1.2.0       ) [CRAN]
bit          (NA -> 4.5.0       ) [CRAN]
progress     (NA -> 1.2.3       ) [CRAN]
tzdb         (NA -> 0.4.0       ) [CRAN]
hms          (NA -> 1.1.3       ) [CRAN]
bit64        (NA -> 4.5.2       ) [CRAN]
showtextdb   (NA -> 3.0         ) [CRAN]
zip          (NA -> 2.3.1       ) [CRAN]
dplyr        (NA -> 1.1.4       ) [CRAN]
vroom        (NA -> 1.6.5       ) [CRAN]
clipr        (NA -> 0.8.0       ) [CRAN]
showtext     (NA -> 0.9-7       ) [CRAN]
openxlsx     (NA -> 4.2.7.1     ) [CRAN]
data.table   (NA -> 1.16.0      ) [CRAN]
tidyr        (NA -> 1.3.1       ) [CRAN]
readr        (NA -> 2.1.5       ) [CRAN]
Downloading GitHub repo Open-Systems-Pharmacology/rSharp@HEAD

── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file 'C:\Temp\RtmpAJ9U5n\remotes55c872cf60dc\Open-Systems-Pharmacology-rSharp-f33f2c0/DESCRIPTION' ...
─  preparing 'rSharp':
✔  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts (352ms)
─  checking for empty or unneeded directories
   Removed empty directory 'rSharp/shared'
─  building 'rSharp_1.0.0.9000.tar.gz'

Installing package into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
(as ‘lib’ is unspecified)
Error: evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted
Downloading GitHub repo Open-Systems-Pharmacology/OSPSuite.RUtils@HEAD
Skipping ospsuite.utils, it is already being installed
Downloading GitHub repo Open-Systems-Pharmacology/TLF-Library@HEAD
Skipping tlf, it is already being installed
Installing 20 packages: sysfonts, tidyselect, generics, cpp11, prettyunits, bit, progress, tzdb, hms, bit64, showtextdb, zip, dplyr, vroom, clipr, showtext, openxlsx, data.table, tidyr, readr
Installing packages into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/sysfonts_0.8.9.zip'
Content type 'application/zip' length 2430265 bytes (2.3 MB)
downloaded 2.3 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/tidyselect_1.2.1.zip'
Content type 'application/zip' length 228159 bytes (222 KB)
downloaded 222 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/generics_0.1.3.zip'
Content type 'application/zip' length 83287 bytes (81 KB)
downloaded 81 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/cpp11_0.5.0.zip'
Content type 'application/zip' length 294306 bytes (287 KB)
downloaded 287 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/prettyunits_1.2.0.zip'
Content type 'application/zip' length 155360 bytes (151 KB)
downloaded 151 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/bit_4.5.0.zip'
Content type 'application/zip' length 1179088 bytes (1.1 MB)
downloaded 1.1 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/progress_1.2.3.zip'
Content type 'application/zip' length 88580 bytes (86 KB)
downloaded 86 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/tzdb_0.4.0.zip'
Content type 'application/zip' length 1016548 bytes (992 KB)
downloaded 992 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/hms_1.1.3.zip'
Content type 'application/zip' length 105440 bytes (102 KB)
downloaded 102 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/bit64_4.5.2.zip'
Content type 'application/zip' length 510325 bytes (498 KB)
downloaded 498 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/showtextdb_3.0.zip'
Content type 'application/zip' length 2012871 bytes (1.9 MB)
downloaded 1.9 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/zip_2.3.1.zip'
Content type 'application/zip' length 434261 bytes (424 KB)
downloaded 424 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/dplyr_1.1.4.zip'
Content type 'application/zip' length 1583531 bytes (1.5 MB)
downloaded 1.5 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/vroom_1.6.5.zip'
Content type 'application/zip' length 1343063 bytes (1.3 MB)
downloaded 1.3 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/clipr_0.8.0.zip'
Content type 'application/zip' length 55560 bytes (54 KB)
downloaded 54 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/showtext_0.9-7.zip'
Content type 'application/zip' length 311997 bytes (304 KB)
downloaded 304 KB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/openxlsx_4.2.7.1.zip'
Content type 'application/zip' length 2450575 bytes (2.3 MB)
downloaded 2.3 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/data.table_1.16.0.zip'
Content type 'application/zip' length 2476995 bytes (2.4 MB)
downloaded 2.4 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/tidyr_1.3.1.zip'
Content type 'application/zip' length 1270281 bytes (1.2 MB)
downloaded 1.2 MB

trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/readr_2.1.5.zip'
Content type 'application/zip' length 1205723 bytes (1.1 MB)
downloaded 1.1 MB

package ‘sysfonts’ successfully unpacked and MD5 sums checked
package ‘tidyselect’ successfully unpacked and MD5 sums checked
package ‘generics’ successfully unpacked and MD5 sums checked
package ‘cpp11’ successfully unpacked and MD5 sums checked
package ‘prettyunits’ successfully unpacked and MD5 sums checked
package ‘bit’ successfully unpacked and MD5 sums checked
package ‘progress’ successfully unpacked and MD5 sums checked
package ‘tzdb’ successfully unpacked and MD5 sums checked
package ‘hms’ successfully unpacked and MD5 sums checked
package ‘bit64’ successfully unpacked and MD5 sums checked
package ‘showtextdb’ successfully unpacked and MD5 sums checked
package ‘zip’ successfully unpacked and MD5 sums checked
package ‘dplyr’ successfully unpacked and MD5 sums checked
package ‘vroom’ successfully unpacked and MD5 sums checked
package ‘clipr’ successfully unpacked and MD5 sums checked
package ‘showtext’ successfully unpacked and MD5 sums checked
package ‘openxlsx’ successfully unpacked and MD5 sums checked
package ‘data.table’ successfully unpacked and MD5 sums checked
package ‘tidyr’ successfully unpacked and MD5 sums checked
package ‘readr’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
    C:\Temp\RtmpAJ9U5n\downloaded_packages
Downloading GitHub repo Open-Systems-Pharmacology/rSharp@HEAD
Skipping rSharp, it is already being installed
Downloading GitHub repo Open-Systems-Pharmacology/OSPSuite.RUtils@HEAD
Skipping ospsuite.utils, it is already being installed
Downloading GitHub repo Open-Systems-Pharmacology/TLF-Library@HEAD
Skipping tlf, it is already being installed
── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file 'C:\Temp\RtmpAJ9U5n\remotes55c8bcb7bb\Open-Systems-Pharmacology-OSPSuite-R-aedb533/DESCRIPTION' ... 
─  preparing 'ospsuite': (624ms)
✔  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts (767ms)
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─  building 'ospsuite_12.1.0.9005.tar.gz'

Installing package into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
(as ‘lib’ is unspecified)
Error: evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted
Downloading GitHub repo Open-Systems-Pharmacology/ospsuite.parameteridentification@HEAD
ospsuite     (NA -> aedb53337...) [GitHub]
ospsuite.... (NA -> 940a4da26...) [GitHub]
numDeriv     (NA -> 2016.8-1.1  ) [CRAN]
DEoptim      (NA -> 2.2-8       ) [CRAN]
nloptr       (NA -> 2.1.1       ) [CRAN]
dfoptim      (NA -> 2023.1.0    ) [CRAN]
Downloading GitHub repo Open-Systems-Pharmacology/OSPSuite-R@HEAD
Skipping ospsuite, it is already being installed
Downloading GitHub repo Open-Systems-Pharmacology/OSPSuite.RUtils@HEAD
Skipping ospsuite.utils, it is already being installed
Installing 4 packages: numDeriv, DEoptim, nloptr, dfoptim
Installing packages into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/numDeriv_2016.8-1.1.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/DEoptim_2.2-8.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/nloptr_2.1.1.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/dfoptim_2023.1.0.zip'
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Downloading GitHub repo Open-Systems-Pharmacology/OSPSuite-R@HEAD
Skipping ospsuite, it is already being installed
Downloading GitHub repo Open-Systems-Pharmacology/OSPSuite.RUtils@HEAD
Skipping ospsuite.utils, it is already being installed
── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file 'C:\Temp\RtmpAJ9U5n\remotes55c825645931\Open-Systems-Pharmacology-OSPSuite.ParameterIdentification-365603e/DESCRIPTION' ...
─  preparing 'ospsuite.parameteridentification':
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─  building 'ospsuite.parameteridentification_2.0.1.9002.tar.gz'
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     'ospsuite.parameteridentification/tests/testthat/_snaps/parameter-identification/before-estimation.svg'

Installing package into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
(as ‘lib’ is unspecified)
Error: evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted
Installing 26 packages: stringi, tidyselect, generics, colorspace, prettyunits, hms, rematch, viridisLite, RColorBrewer, munsell, labeling, farver, scales, isoband, gtable, cpp11, stringr, purrr, dplyr, progress, cellranger, ggplot2, writexl, tidyr, readxl, patchwork
Installing packages into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/prettyunits_1.2.0.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/isoband_0.2.7.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/gtable_0.3.5.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/cpp11_0.5.0.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/stringr_1.5.1.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/ggplot2_3.5.1.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/writexl_1.5.0.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/tidyr_1.3.1.zip'
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trying URL 'http://cran.rstudio.com/bin/windows/contrib/4.4/readxl_1.4.3.zip'
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Downloading GitHub repo Open-Systems-Pharmacology/OSPSuite.RUtils@HEAD
Skipping ospsuite.utils, it is already being installed
Downloading GitHub repo Open-Systems-Pharmacology/TLF-Library@HEAD
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Downloading GitHub repo Open-Systems-Pharmacology/OSPSuite-R@HEAD
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Downloading GitHub repo Open-Systems-Pharmacology/ospsuite.parameteridentification@HEAD
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── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file 'C:\Temp\RtmpAJ9U5n\remotes55c85a7c3f2b\esqLABS-esqlabsR-a1113df/DESCRIPTION' ...
─  preparing 'esqlabsR':
✔  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts (341ms)
─  checking for empty or unneeded directories
   Removed empty directory 'esqlabsR/hextools'
─  building 'esqlabsR_5.2.0.tar.gz'
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     'esqlabsR/tests/testthat/_snaps/sensitivity-spider-plot/sensitivityspiderplot-works-as-expected-with-absolute-y-values.svg'
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
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   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     'esqlabsR/vignettes/presentations/_introduction-to-esqlabsR_cache/revealjs/unnamed-chunk-16_9de3568f55ef4d64cf56db37ed0f8408.rdx'

Installing package into ‘D:/Documents/renv/library/windows/R-4.4/x86_64-w64-mingw32’
(as ‘lib’ is unspecified)
Error: evaluation nested too deeply: infinite recursion / options(expressions=)?
Execution halted
✔ Install esqlabsR and dependencies [2m 53.4s]
Error in library("esqlabsR") : there is no package called ‘esqlabsR’
In addition: There were 45 warnings (use warnings() to see them)
✖ Load esqlabsR [51ms]
PavelBal commented 1 month ago

Using {pak} instead of {remotes} works.