Error running the example data

[luuciasainz]

Dear Armando,

I am trying to run the analysis with your example data but the script resturns me this error:

DIVIDE .ped AND .map FILES IN CHROMOSOMES RUNNING ANALYSIS OF CHROMOSOMES ... CHROMOSOME ANALYSES took 204 seconds Running GONE xargs: bash: terminated by signal 11 xargs: bash: terminated by signal 11 Error opening file outfileLD_TEMP/outfileLD_1_GONE_Nebest END OF ALL PROCESSES GONE run took 0 seconds END OF ANALYSES mv: cannot stat 'outfileLD_Ne_estimates': No such file or directory mv: cannot stat 'outfileLD_d2_sample': No such file or directory

My working directory is the Linux file, where example.map, example.ped, INPUT_PARAMETERS_FILE and script_GONE.sh files are.

The TEMPORARY_FILES folder is created, also the chromosome1-10 .map and .ped files, outfileLD1-LD10 files, and the outfileLD_TEMP folder, however, the latter folder appears empty.

Could you please help me to fix this error?

Thank you very much.

Lucía

[armando-caballero]

Lucía, There must be some problem of GONE with your server, as the previous programs seem to work well, and this is unusual. Can you try in another server? Armando

[sahoo-rk]

@luuciasainz were you able to resolve the issue? I face the same problem.

sahoo