Using LD estimates as input

esrud / GONE

GONE: Scripts, programs and an example data set

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Using LD estimates as input #38

Open apwilder opened 5 months ago

apwilder commented 5 months ago

Hi Armando, I'd like to try GONe on a low coverage dataset. I have LD estimates already generated using another program that uses genotype likelihoods for LD estimation from low coverage data. Is there a way to use those LD estimates as input for GONe? Thanks, Aryn

armando-caballero commented 5 months ago

I do not think so, at least in a direct way. GONE works from the map/ped files. Sorry. Best wishes, Armando.