error in main.nf - incorrect param

esteinig / cerebro

Metagenomic diagnostics stack for low abundance sample types and clinical reporting

GNU General Public License v3.0

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error in main.nf - incorrect param #39

Closed sjlow23 closed 8 months ago

sjlow23 commented 8 months ago

This should be 50 not 50c https://github.com/esteinig/cerebro/blob/8a66f362362f6877f60cd5c30dac82607f9cff0d/main.nf#L151

causes this error:

ERROR ~ No such variable: c

esteinig commented 8 months ago

Hey sorry Soo Jen, the pipeline on main should not be used currently! It's under development, and probably won't work at all right now (ONT integration half-way done) - but thanks for this, correcting it now.

ammaraziz commented 8 months ago

Thanks Eike. That was actually me submitting the bug. Let me know if you don't want these fixes.

We're going to run an older commit and stay out of your way :)

esteinig commented 8 months ago

Soo Jen told me - sorry for the trouble! You can see there is a species identification and the ONT workflow for the Alfred in the works - it's a mess on main though, will revisit next week and bring this into a sharable format since Jean is also pushing on the wet-lab protocol and transfer :)