Option for second read file (Illumina)

esteinig / nanoq

Minimal but speedy quality control for nanopore reads in Rust :bear:

MIT License

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Option for second read file (Illumina) #28

Closed esteinig closed 2 years ago

esteinig commented 2 years ago

Illumina reads should be good to run with the same quality scores [see #27] . It should also be really fast because of much smaller read length. This feature will provide a means of running forward and reverse read files in parallel.

[ ] command line to provide optional second read file
[ ] parallel runners of both read files

esteinig commented 2 years ago

I'm scrapping this, there are much better options e.g. fastp with proper Illumina support