esteinig / nanoq

Minimal but speedy quality control for nanopore reads in Rust :bear:
MIT License
109 stars 9 forks source link

Ambiguous base filter #39

Open esteinig opened 12 months ago

esteinig commented 12 months ago

Requested by @mbhall88

mbhall88 commented 11 months ago

In the meantime, Wei Shen is awesome and there is (of course) a way to do this with seqkit https://github.com/shenwei356/seqkit/issues/403

esteinig commented 11 months ago

Love Wei Shen's work - and of course it was available ^^ I'll flag this for the next version.

There should be a fast way of doing this using the &[u8] sequence from a needletail record.