We've been trying to analyze our data sets with ASpli. Interestingly, if we input only one Bam file, the error occured:
Error in colnames<-(*tmp*, value = as.character(row.names(targets))) :
attempt to set 'colnames' on an object with less than two dimensions
Calls: AsDiscover ... .filterJunctionBySample -> .extractCountColumns -> colnames<- -> colnames<-
Does it mean, that ASpli requires replicates and I overlooked it in the manual?
Dear Olva, thanks for posting it.
Yes, as you said, ASpli is not prepared to proccess single samples. You need replicates (at least 1) and more than 1 condition.
I hope it helps
Estefi
Hi,
We've been trying to analyze our data sets with ASpli. Interestingly, if we input only one Bam file, the error occured:
Error in
colnames<-
(*tmp*
, value = as.character(row.names(targets))) : attempt to set 'colnames' on an object with less than two dimensions Calls: AsDiscover ... .filterJunctionBySample -> .extractCountColumns -> colnames<- -> colnames<-Does it mean, that ASpli requires replicates and I overlooked it in the manual?
Thank you!