estepi
commented
3 years ago Hi Arko, I'm sorry for the delay, I will check your error asap.
In the meantime, can you please:
- use a "fake" replicate (same sample, different name, same condition)
- use a "fake" condition (same sample, diff name, diff condition)
I'll be waiting for your results, Thanks a lot a and happy 2021!
Estefi
Hi I am trying to run ASpli to predict AS events for 1 RNA-seq sample. The code seems to output the following error for jCounts and I have had trouble figuring out the reason. I was wondering if you could help.
> asd= jCounts(counts = gbcounts,threshold= 5, features = features,minReadLength = readlength,libType="PE") Junctions PJU completed Error in (function (cl, name, valueClass) : assignment of an object of class "standardGeneric" is not valid for @'junctionsPIR' in an object of class "ASpliAS"; is(value, "data.frame") is not TRUE
Can you suggest a solution? Thanks Arko