Open andreasleha opened 6 years ago
Hi, Yes. If the chromosome name has a dot, it causes this problem Can you avoid this notation? (For example, replacing with a "-", "_" or nothing.) I can help with this if you need. Cheers, Estefi
Thanks. I am fine.
I opened this report more as a feature request that ASpli should be able to handle this situation or at least give an explicit error earlier on in the pipeline about not being able to handle such names.
Yes, you're completely right. We are trying to fix it in order not to depend on annotation format.
Thanks for the immediate reaction to this issue. Impressive
Dots in chromosome names (such as
AABR07024104.1
) lead to the errorwithin the
.createGRangesExpJunctions
function.This is triggered via
junctionDUreport
, e.g.