Open rfarouni opened 1 year ago
Hi,
The jCounts function scrambles the order of the three columns once it encounters a rowname with NA in it. This happens during unlisting. I was able to solve the problem by filtering out those rows from the junction.counts object.
gb_counts@junction.counts[-which(rownames(gb_counts@junction.counts)=="NA"),]
I am not sure why I had an NA row in the first place.
Best, Rick
I got this NA error too. Your command saved me.
Hi,
The jCounts function scrambles the order of the three columns once it encounters a rowname with NA in it. This happens during unlisting. I was able to solve the problem by filtering out those rows from the junction.counts object.
gb_counts@junction.counts[-which(rownames(gb_counts@junction.counts)=="NA"),]
I am not sure why I had an NA row in the first place.
Best, Rick