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etabari / PorthoMCL

Parallel implementation of OrthoMCL
GNU General Public License v3.0
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FilterFasta error #3

Closed saurabh-mk closed 5 years ago

saurabh-mk commented 7 years ago

Hi,

thanks for this tool which promises to be very useful for my work! Unfortunately, I am stuck with an error at step 2.

I am running PorthoMCL on a bunch of files exactly as suggested.

./porthomcl.sh -s 1 -e 2 -n '(.*)_protein\.faa' container

The files are in container/0.input_faa folder and named like- "GCF_000013025.1_ASM1302v1_protein.faa".

However, I get this error at step 2-

The ID on def line '>GCF_000013025.1_ASM1302v1|WP_011645035.1' is missing the prefix '1_ASM1302v1|' 'GCF_000013025.1_ASM1302v1'

I tried looking for the cause of the error, but I do not know perl at all. What may be the problem?

Saurabh