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etal / cnvkit

Copy number variant detection from targeted DNA sequencing
http://cnvkit.readthedocs.org
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skip CNV with low read depth #653

Open lmanchon opened 3 years ago

lmanchon commented 3 years ago

--Hi,

i have a WES with a minimum depth of sequencing in the order of 200x. In cnvkit is there a parameter to discard CNVs that have less than ~200x sequencing coverage ?

thank you --