etal / cnvkit

Copy number variant detection from targeted DNA sequencing
http://cnvkit.readthedocs.org
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bintest: set 'probes' column to 1 in output #693

Closed etal closed 2 years ago

etal commented 2 years ago

The bintest command's output .cns file is meant to be treated like segmentation results, compatible with e.g. call and scatter, but is not actually a valid .cns because it does not have a 'probes' column.

Exit: Add a 'probes' column and set its value to 1 for all rows.