Genemetrics only runs part way through chr1

[awilliams5544]

Hi,

When I run the gene metrics command:

cnvkit.py genemetrics C1_recal.cnr -s C1_recal.cns -x female -o C1_recal_genemetrics.txt

it completes successfully but only outputs hits from chr1. I came across this issue in another post but I am not sure how to fix it for myself.

Thanks!

[tetedange13]

Hi @awilliams5544,

See my answer here => To fix this, please update to latest version of CNVkit

Hope this helps. Have a nice day, Felix.

[awilliams5544]

Hi Felix,

I will do this, thank you!

August (Gus) Williams he/him Ph.D. Candidate, UCSD Biomedical Sciences Hangauer Lab https://sites.google.com/view/Hangauerlab

From: tetedange13 @.> Date: Tuesday, July 5, 2022 at 6:38 AM To: etal/cnvkit @.> Cc: awilliams5544 @.>, Mention @.> Subject: Re: [etal/cnvkit] Genemetrics only runs part way through chr1 (Issue #746)

Hi @awilliams5544https://urldefense.com/v3/__https:/github.com/awilliams5544__;!!Mih3wA!ClvXV8W2mbwWCv8zBQXv6jCtt3JQiT1ddguj_g_QirgRoipDulBEhXEnCYm5dH71IJ9awjTZC0jOXQUD42Grx3KERso$,

See my answer herehttps://urldefense.com/v3/__https:/github.com/etal/cnvkit/issues/648*issuecomment-879031882__;Iw!!Mih3wA!ClvXV8W2mbwWCv8zBQXv6jCtt3JQiT1ddguj_g_QirgRoipDulBEhXEnCYm5dH71IJ9awjTZC0jOXQUD42GrIrgtuaA$ => To fix this, please update to latest version of CNVkit

Hope this helps. Have a nice day, Felix.

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