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etal / cnvkit

Copy number variant detection from targeted DNA sequencing
http://cnvkit.readthedocs.org
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Remove no-longer needed networkx pinning for Py3.9 #771

Closed DavidCain closed 1 year ago

DavidCain commented 1 year ago

Newer versions of Pomegranate have explicitly added pinning for networkx. Versions 0.14.5 or later should now automatically pin networkx to a minimum of 2.4

https://github.com/jmschrei/pomegranate/commit/eb88995394690090e808dacf6697b7d665278367

There's no longer a need to do this pinning to ensure Python 3.9 compatibility.

Relates to https://github.com/etal/cnvkit/issues/606

etal commented 1 year ago

That's great, thanks for the PR!