etal / cnvkit

Copy number variant detection from targeted DNA sequencing
http://cnvkit.readthedocs.org
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How to integrate the copy numbers of gene. #780

Open THZ34 opened 1 year ago

THZ34 commented 1 year ago

There are multiple bins of some genes, such as: chr1 7723363 7723641 CAMTA1 -0.128231 2 3145.8 0.826085 chr1 7723641 7723919 CAMTA1 -0.158692 2 3716.06 0.781378 chr1 7723919 7724197 CAMTA1 -0.191411 2 4028.32 0.820358 chr1 7724197 7724475 CAMTA1 -0.0889221 2 3794.69 0.787921 chr1 7724475 7724753 CAMTA1 0.0616304 2 4267.65 0.799424 chr1 7724753 7725031 CAMTA1 -0.0437856 2 3732.4 0.816526 chr1 7725031 7725309 CAMTA1 -0.273675 1 2863.06 0.752977

I'm expecting copy number of the whole CAMTA1 gene, is there any way to calculate it?