I ran cnvkit.py batch *Tumor.bam -n -t my_baits.bed -f hg19.fasta \
--access data/access-5kb-mappable.hg19.bed \
--output-reference my_flat_reference.cnn -d example2/ following homepage.
I used hg19.fasta established by UCSC.
I got an error as "KeyError: '1 not in /home/renoguch/hg19/hg19.fa.'"
What should I do ? Please tell me a solution for this error.
The other command was available using hg19.fa in cnvkit.
I ran cnvkit.py batch *Tumor.bam -n -t my_baits.bed -f hg19.fasta \ --access data/access-5kb-mappable.hg19.bed \ --output-reference my_flat_reference.cnn -d example2/ following homepage. I used hg19.fasta established by UCSC. I got an error as "KeyError: '1 not in /home/renoguch/hg19/hg19.fa.'" What should I do ? Please tell me a solution for this error. The other command was available using hg19.fa in cnvkit.