I am interested in copy number variants in whole exome sequencing data and I need to get bed-file and vcf-file to inspect those. As stated in the instruction, I can achieve that by using export bed/vcf command on cns-file.
What would be the difference between using cnvkit.py export on .cns and .call.cns files after default cnvkit.py batch pipeline to get list of SV/CNV?
I am interested in copy number variants in whole exome sequencing data and I need to get bed-file and vcf-file to inspect those. As stated in the instruction, I can achieve that by using
export bed/vcf
command on cns-file.What would be the difference between using
cnvkit.py export
on .cns and .call.cns files after defaultcnvkit.py batch
pipeline to get list of SV/CNV?