What format is the input bam file?

etal / cnvkit

Copy number variant detection from targeted DNA sequencing

http://cnvkit.readthedocs.org

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What format is the input bam file? #856

Open luckilyG opened 11 months ago

luckilyG commented 11 months ago

Thanks a lor for this powerful tool for cnv! Tumor or normal bam must be deduped.bam? Does using ".sorted.deduped.bam" or "sorted.bam" a difference to the results?