Need Help with generating Gene level Copy Number Ratio

etal / cnvkit

Copy number variant detection from targeted DNA sequencing

http://cnvkit.readthedocs.org

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Need Help with generating Gene level Copy Number Ratio #865

Open MaxSimonNm opened 5 months ago

MaxSimonNm commented 5 months ago

Upon following the steps, i eventually get the call.cns. When i open the call.cns file, i get the copy numbers for each segment.. which have multiple genes in them.

Is it possible somehow to get individual gene level copy number ratios?

Anegin24 commented 5 months ago

you can modify the result using dplyr in R