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etal / cnvkit

Copy number variant detection from targeted DNA sequencing
http://cnvkit.readthedocs.org
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pysam.idxstats #866

Open raygozag opened 8 months ago

raygozag commented 8 months ago

Hi, I see pysam.idxstats being used twice at least, this could be cached for each file in a temporary file to avoid duplicate or multiple times. This also includes getting the number of reads or the read lenghts.