etal / cnvkit

Copy number variant detection from targeted DNA sequencing
http://cnvkit.readthedocs.org
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Issue in running cnvkit.py diagram command #872

Closed korol996 closed 2 months ago

korol996 commented 4 months ago
 cnvkit.py diagram -s 002.Sample.cns 002.Sample.cnr

cnvkit.py diagram -s 002.Sample.cns 002.Sample.cnr Traceback (most recent call last):

File "/home/aclab/local/Python-3.12.1/bin/cnvkit.py", line 8, in sys.exit(main()) ^^^^^^ File "/home/aclab/code/cnvkit/cnvlib/cnvkit.py", line 10, in main args.func(args) File "/home/aclab/code/cnvkit/cnvlib/commands.py", line 1365, in _cmd_diagram cnarr or segarr, args.sample_sex, args.male_reference, args.diploid_parx_genome ^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'Namespace' object has no attribute 'diploid_parx_genome'

Screenshot from 2024-03-05 16-55-33

CHENAO-QIAN commented 3 months ago

I am running into the same error.

RafigaM commented 2 months ago

me either