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etal / cnvkit

Copy number variant detection from targeted DNA sequencing
http://cnvkit.readthedocs.org
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Next release? #877

Open gabeng opened 2 months ago

gabeng commented 2 months ago

Hi,

a few changes have accumulated on the master branch that would be very helpful. Are there any plans for a release in the near future?

etal commented 2 months ago

@gabeng I'm aiming for one this week, while I have some time off.

serge2016 commented 2 months ago

@etal thank you! Waiting for it!

etal commented 2 months ago

Folks, CNVkit 0.9.11 is released. Enjoy!

serge2016 commented 2 months ago

Dear @etal! Could you add this tag https://github.com/etal/cnvkit/releases/tag/v0.9.11 to the releases https://github.com/etal/cnvkit/releases , please?

etal commented 2 months ago

Yep, freshly rolled: https://github.com/etal/cnvkit/releases/tag/v0.9.11

serge2016 commented 2 months ago

Thank you very much!

gabeng commented 2 months ago

Apologies for my ignorance - what has to be done such that the bioconda recipe build job succeeds? https://github.com/bioconda/bioconda-recipes/pull/47204

etal commented 2 months ago

This is a new one to me, looks like a static check on the conda packaging failed:

Error message:

ERROR: recipes/cnvkit/meta.yaml:0: missing_run_exports: Recipe should have a run_exports statement that ensures correct pinning in downstream packages

Explanation:

I'll see what I can do.

etal commented 2 months ago

Here's a possible fix for the conda recipe: https://github.com/etal/cnvkit/pull/880

I have no idea how to test whether this patch will fix the build for bioconda.

gabeng commented 2 months ago

Someone seems to have pushed it through. The docker build succeeded, too. All good from my point of view now.