Installation failure

[adamaequo]

Hey, I tried to install PyEtaler on a ubuntu20.04, and so far all 3 methods failed, because of the same error. I successfully installed Etaler, and was able to run the examples, but no luck getting PyEtaler to work so far.

Here is the full log of executing the command: "python3 genbinding.py" https://pastebin.com/24K4H0mP

If I run the rootcling command on its own, I get:

$ rootcling -v3 -f etaler_rflx.cpp -cxxflags -std=c++1z -Wno-implicit-fallthrough -pipe  -fsigned-char -pthread Etaler/Etaler.hpp Etaler/3rdparty/backward-cpp/backward.hpp Etaler/3rdparty/backward-cpp/test/test.hpp Etaler/3rdparty/half_precision/half.hpp Etaler/3rdparty/pcg-cpp/include/pcg_extras.hpp Etaler/3rdparty/pcg-cpp/include/pcg_random.hpp Etaler/3rdparty/pcg-cpp/include/pcg_uint128.hpp Etaler/Algorithms/Anomaly.hpp Etaler/Algorithms/Boost.hpp Etaler/Algorithms/SDRClassifer.hpp Etaler/Algorithms/SpatialPooler.hpp Etaler/Algorithms/SpatialPoolerND.hpp Etaler/Algorithms/Synapse.hpp Etaler/Algorithms/TemporalMemory.hpp Etaler/Backends/CPUBackend.hpp Etaler/Core/Backend.hpp Etaler/Core/DType.hpp Etaler/Core/DefaultBackend.hpp Etaler/Core/Error.hpp Etaler/Core/Half.hpp Etaler/Core/Random.hpp Etaler/Core/Serialize.hpp Etaler/Core/Shape.hpp Etaler/Core/SmallVector.hpp Etaler/Core/String.hpp Etaler/Core/Tensor.hpp Etaler/Core/TensorImpl.hpp Etaler/Core/TypeHelpers.hpp Etaler/Core/TypeList.hpp Etaler/Core/Views.hpp Etaler/Encoders/Category.hpp Etaler/Encoders/GridCell1d.hpp Etaler/Encoders/GridCell2d.hpp Etaler/Encoders/Scalar.hpp selection.xml
rootcling: for the   -f option: may only occur zero or one times!
rootcling: for the   -s option: may not occur within a group!

To me it seems like this error occurs because "-std=c++1z" is a -s option and "-fsigned-char" a -f option...

[marty1885]

@adamaequo Hi, thanks for reporting the issue. Hmm... do you happen to have ROOT installed on your computer? Their rootcling installation would clash and produce weird outputs.

[adamaequo]

As far as I am aware of, no. I tested it with:

$ root

Command 'root' not found, but can be installed with:

sudo snap install root-framework

[marty1885]

Thanks, may you share the version of cppyy, gcc and python you are using?

[adamaequo]

$ python3 --version
Python 3.8.5

$ pip list | grep cppyy
WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
cppyy                        2.0.0               
cppyy-backend                1.14.5              
cppyy-cling                  6.25.0              

$ gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) 

[wlav]

cppyy 2.0.0 has Cling based on Clang9, the options parser of which has changed: options that are not recognized are no longer send into a "sink" option if part of the option is recognized. That is "-std=c++1z" is parsed as "-s td=c++1z" b/c the "-s" is a valid option. Similar for "-f". To pass extra CLI arguments to Cling, underlying rootcling, use the -cxxflags option, and collate all options with a set of quotes, so for example: -cxxflags='-std=c++1z -fsigned-char'. That will make Clang9 happy.

Note that that syntax is compatible with cppyy 1.x, as the -cxxflags option has been around since the beginning, just that the "sink" option was more convenient.

[marty1885]

@wlav Thanks for helping! There seems to be problem with the new cling. It seems to be stuck in an infinite recursion. I think I've seen this behavior before cppyy 2.0. But ignored it since I can fallback to a old cppyy.

 #22 0x00007f8851dc5ad6 CppyyLegacy::TMemberInspector::InspectMember(char const*, void const*, char const*, bool) (/home/marty/.local/lib/python3.9/site-packages/cppyy_backend/lib/libCoreLegacy.so+0x100ad6)
 #23 0x00007f88525e5fb0 CppyyLegacy::TCling::InspectMembers(CppyyLegacy::TMemberInspector&, void const*, CppyyLegacy::TClass const*, bool) (/home/marty/.local/lib/python3.9/site-packages/cppyy_backend/lib/libCling.so+0x646fb0)
 #24 0x00007f8851e211ca CppyyLegacy::TClass::CallShowMembers(void const*, CppyyLegacy::TMemberInspector&, bool) const (/home/marty/.local/lib/python3.9/site-packages/cppyy_backend/lib/libCoreLegacy.so+0x15c1ca)
 #25 0x00007f8851dc5ad6 CppyyLegacy::TMemberInspector::InspectMember(char const*, void const*, char const*, bool) (/home/marty/.local/lib/python3.9/site-packages/cppyy_backend/lib/libCoreLegacy.so+0x100ad6)
 #26 0x00007f88525e5fb0 CppyyLegacy::TCling::InspectMembers(CppyyLegacy::TMemberInspector&, void const*, CppyyLegacy::TClass const*, bool) (/home/marty/.local/lib/python3.9/site-packages/cppyy_backend/lib/libCling.so+0x646fb0)
 #27 0x00007f8851e211ca CppyyLegacy::TClass::CallShowMembers(void const*, CppyyLegacy::TMemberInspector&, bool) const (/home/marty/.local/lib/python3.9/site-packages/cppyy_backend/lib/libCoreLegacy.so+0x15c1ca)
 #28 0x00007f8851dc5ad6 CppyyLegacy::TMemberInspector::InspectMember(char const*, void const*, char const*, bool) (/home/marty/.local/lib/python3.9/site-packages/cppyy_backend/lib/libCoreLegacy.so+0x100ad6)
...

I tried to debug this myself. But it's way too out of my capabilities. ROOT 6.24 seem to be able to handle the library just fine. Should I open a bug in cppyy?

[wlav]

Should I open a bug in cppyy?

If it's standalone reproducible, then sure.