Open EricDeveaud opened 3 years ago
Hello,
I'm trying to dig the etee external tools dependencies.
and found some conflicting informations. meta.yaml extracted from https://anaconda.org/etetoolkit/ete_toolchain/3.0.0/download/linux-64/ete_toolchain-3.0.0-h73706c9_0.tar.bz2
meta.yaml
gives the following list for externale tools (NB I removed system components)
- phylobayes 4.1c.* - phyml 20160115.patched.* - muscle 3.8.31.* - kalign 2.03.* - slr 1.4.3.* - iqtree 1.5.5.* - pmodeltest 1.4.* - trimal 1.4.* - argtable2 2.13.* - t_coffee 11.00.* - raxml 8.2.11.* - dialigntx 1.0.2.* - clustalo 1.2.4.* - paml 4.8.* - mafft 6.861.* - fasttree 2.1.*
ete3/tools/ete_build_lib/apps.py gives following information
ete3/tools/ete_build_lib/apps.py
APPTYPES = { "aligners": set(["muscle", "mafft", "clustalo", "metaligner", "dialingtx", "tcoffee"]), "model testers": set(["prottest", "pmodeltest"]), "alg cleaners": set(["trimal"]), "tree builders": set(["fasttree", "phyml", "raxml", "iqtree"]), "COG selectors": set(["cogselector"]), "alg concatenators": set(["concatalg"]), }
and https://github.com/etetoolkit/ext_apps/tree/master/src list
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can you provide a comprehensive list of dependencies with version and upstream url ?
regards
Eric
Hello,
I'm trying to dig the etee external tools dependencies.
and found some conflicting informations.
meta.yaml
extracted from https://anaconda.org/etetoolkit/ete_toolchain/3.0.0/download/linux-64/ete_toolchain-3.0.0-h73706c9_0.tar.bz2gives the following list for externale tools (NB I removed system components)
ete3/tools/ete_build_lib/apps.py
gives following informationand https://github.com/etetoolkit/ext_apps/tree/master/src list
can you provide a comprehensive list of dependencies with version and upstream url ?
regards
Eric