GTDBTaxa query needs to update with GCA calls in NCBI

etetoolkit / ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

http://etetoolkit.org

GNU General Public License v3.0

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GTDBTaxa query needs to update with GCA calls in NCBI #655

Closed dengzq1234 closed 1 year ago

dengzq1234 commented 1 year ago

GTDB uses GCF (RefSeq) records when available, hence it's better to link GCA calls to the corresponding GCF record.

Solutions: https://twitter.com/ace_gtdb/status/1256985558389153802

dengzq1234 commented 1 year ago

handy script for this purpose https://github.com/dengzq1234/GTDB-id-convertor