update GTDB module and Taxa tutorial

[dengzq1234]

here is updates of GTDBTaxa module to sync with fixed NCBITaxa module. Therefore update of documentation of related session of ete4 is also necessary

GTDBTaxa

• correct syntax to start PhyloTree(name=name) => PhyloTree({"name":name})
• update the fetching order in annotate_tree(), fetch "species" or custom taxid_attr frist from node attribute then to node properties.

docs

• correct a typo in smartview drawing documentation
• update with more cases in taxonomy documentation

tests Considering we found the bug in NCBI/GTDB annotation, it means the current unitest need to update to cover these features for the further development.

• update test different method to pass taxonomic identifier in test_ncbiquery.py
• update test different method to pass taxonomic identifier in test_gtdbquery.py

[jordibc]

Thanks @dengzq1234 !