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eth-mds / ricu

🏥 ICU data with R 🏥
https://eth-mds.github.io/ricu/
GNU General Public License v3.0
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Strange error when I download miiv dataset #42

Closed PolarisMyself closed 6 months ago

PolarisMyself commented 10 months ago

Description: I am encountering an unusual error while attempting to download the miiv dataset. The error message I am receiving is as follows:

Error in `assert_that()`:
! core/omr.csv.gz was not found among the provided options. Did you
possibly mean hosp/drgcodes.csv.gz instead?

Code Snippet: Here is the relevant code snippet that is causing the error:

admissions_df <- as.data.frame(miiv$admissions)
icustays_df <- as.data.frame(miiv$icustays)
patients_df <- as.data.frame(miiv$patients)

Issue Background: I have tried to use the above code to download the miiv dataset, but I am consistently encountering this error. Strangely, I have successfully used a similar approach to download the MIMIC III dataset without any issues.

Question: Could this error possibly be caused by a version difference in the miiv dataset compared to MIMIC III? I am using the latest versions of the packages and libraries, but this issue persists.

Request for Assistance: I am new to R, and I find it difficult for me to solve the error by reading source code. I would greatly appreciate any guidance or insights regarding this error. If anyone has encountered a similar problem or has suggestions on how to resolve it, please share your thoughts.

Thank you for your help!

dplecko commented 6 months ago

In ricu 0.6.0, this should be resolved since MIMIC-IV version was bumped to 2.2. If the problem still persists, please open a new issue, and I will be happy to have a look.