R should be able to write an appropriate batch job file and feed it to OpenChrom with a system call to access their file converters. For example, they have parsers for several FID formats which don't seem to be available otherwise.
Alternatively, if someone who understands Java reads this and wants to figure out how to call the parsers directly from R (e.g. using rJava) I think that would be great as well.
ethanbass
commented
2 years ago
OpenChrom includes a command line interface that can be used to call their file parsers: https://github.com/OpenChrom/openchrom/wiki/CLI.
R should be able to write an appropriate batch job file and feed it to OpenChrom with a system call to access their file converters. For example, they have parsers for several FID formats which don't seem to be available otherwise.
Alternatively, if someone who understands Java reads this and wants to figure out how to call the parsers directly from R (e.g. using rJava) I think that would be great as well.