v0.5.0 - Githubissues

chromConverter 0.5.0

Added support for parallel processing through pbapply package. (Note: The pbapply package must be manually installed to enable parallel processing).
Added internal parser for 'Agilent Chemstation' version 31 files (through read_chemstation_uv function).
Added support for 'Agilent OpenLab' version 131 files through internal parser.
Added preliminary support for reading 'Agilent' (.dx) files (through read_agilentdx function).
Added support for reading 'Chemstation' REPORT files.
Added parser for Shimadzu .lcd files through the read_shimadzu_lcd function. Only the PDA stream (not MS) is currently supported.
Added read_peaklist function for reading peak lists. Currently 'Agilent Chemstation' and 'Shimadzu ASCII' formats are supported.
Added verbose argument to control console output for external parsers ('OpenChrom' and 'ThermoRawFileParser').

Improved automatic filetype detection by read_chroms.
Refactored read_thermoraw function to simplify paths.
The thermoraw and openchrom parsers now use a proper temp directory if an export directory is not specified through the path_out argument.
Re-factored reshape_chroms, speeding up conversion from wide to long format.
Added additional tests, attaining 82% test coverage.
Changed default openchrom export format to mzml.
Minor changes to some metadata fields to better standardize results across different file formats and parsers.

Corrected 'Shimadzu' DAD parser so it reads wavelengths from the file instead of inferring them.
Fixed bug causing failure of 'Shimadzu' ascii parser (when what == "peak_table" and read_metadata == TRUE).
Fixed bug causing 'MDF' files to export as data.frames when format_out == "matrix".
Fixed misleading data_format attributes in 'Waters ARW' and 'Chromeleon' parsers.