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etheleon
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dengue
For everything related to NEA dengue
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Shift config out of `dengue.models.<MODEL>` into experiments
#55
etheleon
opened
1 day ago
1
Store model metrics and Make `train.py` part of the dengue package
#54
etheleon
opened
1 day ago
0
Change INLA to more generic module name
#53
etheleon
opened
2 days ago
0
Final boss Generate report for Management
#52
etheleon
opened
2 days ago
0
Retry with diff params
#51
etheleon
opened
2 days ago
1
Model tuning Analysis
#50
etheleon
closed
2 days ago
1
Allow python to call R-INLA model
#49
etheleon
closed
2 days ago
0
Include linters as github actions
#48
etheleon
opened
2 days ago
0
Include new metric: delta(cases) against coverage
#47
etheleon
opened
3 days ago
0
:sparkles: Predict cases in 2023
#46
etheleon
closed
2 days ago
0
Population Size
#45
etheleon
closed
2 days ago
2
Fix missing utils for dataset generation
#44
etheleon
closed
6 days ago
1
Missed out function in previous PR for target dataset
#43
etheleon
closed
6 days ago
0
Use dynaconf for finding settings and secrets file
#42
etheleon
closed
1 week ago
1
Fix pyproject
#41
etheleon
opened
1 week ago
0
:sparkles: Create dataset generation script to include target eg. cases
#40
etheleon
closed
2 weeks ago
1
:sparkles: Refactor INLA
#39
etheleon
closed
2 weeks ago
1
Adapt Emilie's source for training and prediction
#38
etheleon
closed
2 weeks ago
0
Create function to generate target
#37
etheleon
closed
2 weeks ago
1
Parameterise inputs ie. start and end training dates
#36
etheleon
closed
2 weeks ago
1
Install kubeflow pipelines on server
#35
etheleon
closed
2 weeks ago
0
:bug: Fix dependency issue between pandas and numpy
#34
etheleon
closed
2 weeks ago
0
:bug: Issue with numpy and pandas compatibility.
#33
etheleon
closed
2 weeks ago
0
EPIWEEK does not equal ISOWEEK
#32
etheleon
opened
2 weeks ago
0
:sparkles: Include days no rain
#31
etheleon
closed
2 weeks ago
0
✨ Make dengue package
#30
etheleon
closed
2 weeks ago
2
Refactor respository
#29
etheleon
closed
2 weeks ago
0
WIP: continue tomorrow
#28
etheleon
closed
2 weeks ago
2
:fix: rename function for daily avg temp
#27
etheleon
closed
3 weeks ago
0
:bug: Name of avg temp feature function is wrong
#26
etheleon
closed
3 weeks ago
0
:wrench: remove hardcoded table and schema
#25
etheleon
closed
3 weeks ago
1
Update time switch function to include schema, tbl,
#24
etheleon
closed
3 weeks ago
0
Check for path to secret in environment variable
#23
etheleon
closed
1 week ago
0
:sparkles: Add `max_t_scale_dd_day_avg`
#22
etheleon
closed
3 weeks ago
0
Convert notebook to be kubeflow pipeline compatible
#21
etheleon
opened
3 weeks ago
1
:wrench: Fix files to make utils accessible
#20
etheleon
closed
4 weeks ago
0
Parameterise training and eval
#19
etheleon
closed
2 days ago
3
:sparkles: Add time_since_switch transformation
#18
etheleon
closed
3 weeks ago
3
Publish predictions for dengue cases
#17
etheleon
opened
4 weeks ago
0
Dockerfile describing dependencies for INLA model
#16
etheleon
opened
4 weeks ago
0
Test out train and predict
#15
etheleon
closed
2 days ago
1
Dockerise the predict step as part of the productionization of the model
#14
etheleon
opened
4 weeks ago
0
Injest raw tables into SQL db
#13
etheleon
closed
4 weeks ago
0
Write SQL transformation for `max_t_scale_12_wk_avg_0` feature
#12
etheleon
closed
3 weeks ago
0
Write SQL transformation for `nino34_12_wk_avg_4` feature
#11
etheleon
closed
2 weeks ago
1
Write SQL transformation for `days_no_rain_12_wk_total_0` feature
#10
etheleon
closed
2 weeks ago
0
Write SQL transformation for `time_since_switch` feature
#9
etheleon
closed
3 weeks ago
0
Run INLA model with input data
#8
etheleon
closed
2 days ago
0
:wrench: Update release site
#7
etheleon
closed
1 month ago
1
Update injestion to use date format `%Y-%m-%d`
#6
etheleon
closed
1 month ago
1
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