Week 8 Assignment - Githubissues

ettaschaye / qbb2024-answers

0 stars 0 forks source link

Week 8 Assignment #13

Open msiqi opened 1 week ago

msiqi commented 1 week ago

Part 1: R Script (6.5 pt)

Evaluation:

Loading data: 1/1 pt scrublet is likely is some kind of doublet score for doublet removal
Exploring data: 2.5/2.5 pt 4a high count means high transcript count in cell, so what would that mean for a cell?
Identifying marker genes: 2.75/3 pt som intestinal stem cell top markers are off since you took the head of intest rather than intest_order

Score: 6.25/6.5 pt

Part 2: Plots (3.5 pt)

Evalutation:

Broad annotation vs % mitochondrial reads: 0.5/0.5 pt
Epithelial cells UMAP colored by annotation: 1/1 pt
Expression plot of top marker gene in epithelial cell according to annotation: 0/1 pt missing
Expression plot of top six marker genes in precursor cells according to annotation: 0/1pt missing

Score: 1.5/3.5 pt

Total score: 7.75/10 pt