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euba / BacArena

agent based modelling
GNU General Public License v3.0
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FVA Min-Max mix up in FluxVarSim() #172

Closed shraddhakhirwadkar closed 3 years ago

shraddhakhirwadkar commented 3 years ago

Hi! I have been trying to simulate individual strains, Bifidobacterium longum infantis ATCC 15697 in this case, in BacArena and looking at the flux variability during the simulation with fluxVarSim(). The only media that is in the environment is 10% of essential media and 1mM EX_glc_D(e). I have attached an image of the results, and the FVA seems to have a mix-up between min-max. Is it possible that min-max are switched up by mistake as seen in the other image attached? Thank you for your help in advance!

Bifidobacterium longum infantis ATCC 15697 FVA fluxVarSim

jotech commented 3 years ago

hi @shraddhakhirwadkar I should have looked here before answering your mail since you already pointed to the erroneous lines, yes definitely this was the error!! Thanks :)