Using your tool for single cell data barcoded with split-seq technology and not droplet based

eudoraleer / scasa

SCASA: Single cell transcript quantification tool

GNU General Public License v3.0

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Using your tool for single cell data barcoded with split-seq technology and not droplet based #10

Open vasikara17 opened 7 months ago

vasikara17 commented 7 months ago

Hello, thank you for the very interesting tool. I am having single cell data barcoded with the split-seq technology and I would like to do a prediction with the shorts reads of potential splicing events. Is the tool supporting this type of sequencing data? I saw only 10X technology in the settings.

Best regards VK

eudoraleer commented 7 months ago

Dear VK,

Thanks for the question. Currently, we only supports data from 10X Genomics, but if you have the same data structure (with 3 prime bias) and fragment length, you could do that, otherwise, we do not support at this moment.

Best regards, Lu