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eveilyeverafter / HMMancestry

R package using the Forward-Backward algorithm to infer genotypes, recombination hotspots, and gene conversion tracts from low-coverage next-generation sequence data.
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the FB and Viterbi algorithms input #1

Closed eveilyeverafter closed 9 years ago

eveilyeverafter commented 9 years ago

The FB and Viterbi algorithms should incorporate a new input format to jibe with the other functions' output (as in simulate.R) and the users empirical data.

eveilyeverafter commented 9 years ago

FB algorithm has the new input method. I'll work on the viterbi next.

eveilyeverafter commented 9 years ago

The viterbi function now takes the same input (snp.recom).