unknown macros when roxygenizing the package

eveilyeverafter / HMMancestry

R package using the Forward-Backward algorithm to infer genotypes, recombination hotspots, and gene conversion tracts from low-coverage next-generation sequence data.

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unknown macros when roxygenizing the package #14

Closed eveilyeverafter closed 9 years ago

eveilyeverafter commented 9 years ago

I'm getting errors when making the roxygen files. E.g.,

Warning: /private/var/folders/g1/lzhjthgs1d3gpm1j4q3m4pbm0000gn/T/Rtmp9ufaN7/Rbuild680479c423a7/hmmspore/man/tetrad_est_fwd_back.Rd:35: unknown macro '\item'

other warnings for \equ, \pi, \dequ and others.

Do you have any experience with these issues?

eveilyeverafter commented 9 years ago

At this point all the functions need an overhaul on their descriptions. I'll fix them in time.