R package using the Forward-Backward algorithm to infer genotypes, recombination hotspots, and gene conversion tracts from low-coverage next-generation sequence data.
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output format change request for estimate_anc_fwd_back() #5
Currently, estimate_anc_fwd_back() is done for individual spores but all four spores need to be inferred to make any recombination inference. Right now I run an lappy to go through each of the four spores and execute estimate_anc_fwd_back(), returning a list of for elements with each element being of class forward.backward.
to do: make estimate_anc_fwd_back() automatically return the results of the four spores and have the whole list be of class forward.backward.
eveilyeverafter
commented
9 years ago
Currently, estimate_anc_fwd_back() is done for individual spores but all four spores need to be inferred to make any recombination inference. Right now I run an lappy to go through each of the four spores and execute estimate_anc_fwd_back(), returning a list of for elements with each element being of class forward.backward.
to do: make estimate_anc_fwd_back() automatically return the results of the four spores and have the whole list be of class forward.backward.