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everest-castaneda / knext

Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Markup Language File to a TSV file that is usable in network analyses.
MIT License
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error of convert #3

Open Sotdo opened 4 weeks ago

Sotdo commented 4 weeks ago

When I follow the commands provided by the manul. I got the following error.

knext convert kegg_gene_network_spo spo -up
Please input a directory of KGML files or an individual KGML file...

everest-castaneda commented 3 weeks ago

Hello,

There should be an extensive update coming soon. I think that command might be written in the wrong order in the manual. I'll need to do some testing. At the moment, try to use the following:

knext convert spo kegg_gene_network_spo -up

It works on my end. Let me know if that helps.

Sotdo commented 3 weeks ago

Thanks. This command also works on my hands.