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everhartlab / sclerotinia-366

Analysis for "Population structure and phenotypic variation of *Sclerotinia sclerotiorum* from dry bean (*Phaseolus vulgaris*) in the United States"
https://doi.org/10.7717/peerj.4152
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Simplify MLG/MCG graph figure #9

Closed zkamvar closed 7 years ago

zkamvar commented 7 years ago

@sporangia has brought up a good point that the MLG/MCG graph figure (Fig. 3 so far) is way too complex to discern. She suggested a summary and liked the idea of showing a subset of the graph with the larger graph inset and grouping that with figure S1 (The MCG bar graph).

zkamvar commented 7 years ago

I have removed the community colors and changed outline to color to distinguish MLG and MCG. I have also reversed the arrows so MLGs are pointing toward MCGs, which gives a nicer impression of MCG as a phenotype from a genotype.

@sporangia, which one do you like better?

Subset to 5 MCGs:

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Subset to 8 MCGs (those represented by >= 10 isolates):

image

zkamvar commented 7 years ago

Sorry, 53 is actually representing 9 isolates

zkamvar commented 7 years ago

Actually, forget about those above, those actually represent the MCGs with the most MLGs associated. Gimme a sec for the top 5/8 MCGs

zkamvar commented 7 years ago

Top 5:

image

Top 8 (n >= 10):

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zkamvar commented 7 years ago

Here's what I've settled on:

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